View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1528_low_6 (Length: 405)

Name: NF1528_low_6
Description: NF1528
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1528_low_6
NF1528_low_6
[»] chr1 (7 HSPs)
chr1 (29-146)||(958702-958819)
chr1 (282-393)||(958452-958564)
chr1 (103-147)||(7121238-7121282)
chr1 (103-147)||(32133706-32133750)
chr1 (103-147)||(35738834-35738878)
chr1 (103-147)||(39026979-39027023)
chr1 (103-147)||(50100047-50100091)
[»] chr5 (5 HSPs)
chr5 (103-147)||(3049597-3049641)
chr5 (103-147)||(14645889-14645933)
chr5 (103-147)||(30775045-30775089)
chr5 (103-147)||(32302628-32302672)
chr5 (103-147)||(35853761-35853805)
[»] chr4 (1 HSPs)
chr4 (103-147)||(52014027-52014071)
[»] scaffold0242 (2 HSPs)
scaffold0242 (103-147)||(12910-12954)
scaffold0242 (103-147)||(21745-21789)
[»] chr7 (4 HSPs)
chr7 (103-147)||(12499431-12499475)
chr7 (103-147)||(26299627-26299671)
chr7 (103-147)||(34152217-34152261)
chr7 (103-147)||(34174863-34174907)
[»] chr6 (2 HSPs)
chr6 (103-147)||(6799259-6799303)
chr6 (103-147)||(9061966-9062010)
[»] chr3 (5 HSPs)
chr3 (103-147)||(30964384-30964428)
chr3 (103-147)||(30980196-30980240)
chr3 (103-147)||(36678936-36678980)
chr3 (103-147)||(38694671-38694715)
chr3 (103-147)||(43657491-43657535)
[»] chr2 (4 HSPs)
chr2 (103-147)||(2657032-2657076)
chr2 (103-147)||(11788847-11788891)
chr2 (103-147)||(35048857-35048901)
chr2 (103-147)||(42969260-42969304)


Alignment Details
Target: chr1 (Bit Score: 106; Significance: 6e-53; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 29 - 146
Target Start/End: Complemental strand, 958819 - 958702
Alignment:
Q  29 agtagaaaagttgaaaaactacagagtaataaataataagtgatgtacaatggaaaaataacggtgggatagagaaagttgtagttgtatgataaagtta 128  Q
    ||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  958819 agtagaaaagttgaaaaactatagagtaataaatagtaagtgatgtacaatggaaaaataacggtgggatagagaaagttgtagttgcatgataaagtta 958720  T
Q  129 taataaattgttactaaa 146  Q
    ||||||||||||||||||    
T  958719 taataaattgttactaaa 958702  T

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Target: chr1; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 282 - 393
Target Start/End: Complemental strand, 958564 - 958452
Alignment:
Q  282 gggttgtggggttgggtagtatagtgcacatatccgtttaaattt-cggcttattatccatacctaacctcggatcatgaatacaagattttactctacc 380  Q
    ||||||||||||||||||||| |||||||||||||||| |||||| ||||| |||||||||||||||||||||| |||||| ||| ||||||||||||||    
T  958564 gggttgtggggttgggtagtacagtgcacatatccgttcaaatttgcggctaattatccatacctaacctcggaccatgaaaacatgattttactctacc 958465  T
Q  381 tatagtggatatt 393  Q
    || ||||||||||    
T  958464 taaagtggatatt 958452  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 103 - 147
Target Start/End: Original strand, 7121238 - 7121282
Alignment:
Q  103 aaagttgtagttgtatgataaagttataataaattgttactaaag 147  Q
    ||||||||||||| ||| |||| | ||||||||||||||||||||    
T  7121238 aaagttgtagttgcatgttaaaatcataataaattgttactaaag 7121282  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 103 - 147
Target Start/End: Original strand, 32133706 - 32133750
Alignment:
Q  103 aaagttgtagttgtatgataaagttataataaattgttactaaag 147  Q
    ||||||||||||| ||| |||| | ||||||||||||||||||||    
T  32133706 aaagttgtagttgcatgttaaaatcataataaattgttactaaag 32133750  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 103 - 147
Target Start/End: Complemental strand, 35738878 - 35738834
Alignment:
Q  103 aaagttgtagttgtatgataaagttataataaattgttactaaag 147  Q
    ||||||||||||| ||| |||| | ||||||||||||||||||||    
T  35738878 aaagttgtagttgcatgttaaaatcataataaattgttactaaag 35738834  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 103 - 147
Target Start/End: Original strand, 39026979 - 39027023
Alignment:
Q  103 aaagttgtagttgtatgataaagttataataaattgttactaaag 147  Q
    ||||||||||||| ||| |||| | ||||||||||||||||||||    
T  39026979 aaagttgtagttgcatgttaaaatcataataaattgttactaaag 39027023  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 103 - 147
Target Start/End: Original strand, 50100047 - 50100091
Alignment:
Q  103 aaagttgtagttgtatgataaagttataataaattgttactaaag 147  Q
    |||| |||||||| ||| |||||| ||||||||||||||||||||    
T  50100047 aaagatgtagttgcatgttaaagtcataataaattgttactaaag 50100091  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 103 - 147
Target Start/End: Complemental strand, 3049641 - 3049597
Alignment:
Q  103 aaagttgtagttgtatgataaagttataataaattgttactaaag 147  Q
    ||||||||||||| ||| ||||||| |||||||||||||||||||    
T  3049641 aaagttgtagttgcatgttaaagttctaataaattgttactaaag 3049597  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 103 - 147
Target Start/End: Original strand, 14645889 - 14645933
Alignment:
Q  103 aaagttgtagttgtatgataaagttataataaattgttactaaag 147  Q
    ||||||||||||| ||| |||| | ||||||||||||||||||||    
T  14645889 aaagttgtagttgcatgttaaaatcataataaattgttactaaag 14645933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 103 - 147
Target Start/End: Original strand, 30775045 - 30775089
Alignment:
Q  103 aaagttgtagttgtatgataaagttataataaattgttactaaag 147  Q
    ||||||||||||| ||| |||| | ||||||||||||||||||||    
T  30775045 aaagttgtagttgcatgttaaaatcataataaattgttactaaag 30775089  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 103 - 147
Target Start/End: Original strand, 32302628 - 32302672
Alignment:
Q  103 aaagttgtagttgtatgataaagttataataaattgttactaaag 147  Q
    ||||||||||||| ||| |||| | ||||||||||||||||||||    
T  32302628 aaagttgtagttgcatgttaaaatcataataaattgttactaaag 32302672  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 103 - 147
Target Start/End: Original strand, 35853761 - 35853805
Alignment:
Q  103 aaagttgtagttgtatgataaagttataataaattgttactaaag 147  Q
    ||||||||||||| ||| |||| | ||||||||||||||||||||    
T  35853761 aaagttgtagttgcatgttaaaatcataataaattgttactaaag 35853805  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 103 - 147
Target Start/End: Original strand, 52014027 - 52014071
Alignment:
Q  103 aaagttgtagttgtatgataaagttataataaattgttactaaag 147  Q
    ||||||||||||| ||| |||||| ||||||||||||||||||||    
T  52014027 aaagttgtagttgcatgttaaagtcataataaattgttactaaag 52014071  T

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Target: scaffold0242 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: scaffold0242
Description:

Target: scaffold0242; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 103 - 147
Target Start/End: Complemental strand, 12954 - 12910
Alignment:
Q  103 aaagttgtagttgtatgataaagttataataaattgttactaaag 147  Q
    ||||||| ||||| ||| |||||| ||||||||||||||||||||    
T  12954 aaagttgcagttgcatgttaaagtcataataaattgttactaaag 12910  T

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Target: scaffold0242; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 103 - 147
Target Start/End: Complemental strand, 21789 - 21745
Alignment:
Q  103 aaagttgtagttgtatgataaagttataataaattgttactaaag 147  Q
    ||||||| ||||| ||| |||||| ||||||||||||||||||||    
T  21789 aaagttgcagttgcatgttaaagtcataataaattgttactaaag 21745  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 103 - 147
Target Start/End: Complemental strand, 12499475 - 12499431
Alignment:
Q  103 aaagttgtagttgtatgataaagttataataaattgttactaaag 147  Q
    ||||||||||||| ||| |||| | ||||||||||||||||||||    
T  12499475 aaagttgtagttgcatgttaaaatcataataaattgttactaaag 12499431  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 103 - 147
Target Start/End: Original strand, 26299627 - 26299671
Alignment:
Q  103 aaagttgtagttgtatgataaagttataataaattgttactaaag 147  Q
    ||||||||||||| ||| |||| | ||||||||||||||||||||    
T  26299627 aaagttgtagttgcatgttaaaatcataataaattgttactaaag 26299671  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 103 - 147
Target Start/End: Complemental strand, 34152261 - 34152217
Alignment:
Q  103 aaagttgtagttgtatgataaagttataataaattgttactaaag 147  Q
    ||||||||||||| ||| |||| | ||||||||||||||||||||    
T  34152261 aaagttgtagttgcatgttaaaatcataataaattgttactaaag 34152217  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 103 - 147
Target Start/End: Original strand, 34174863 - 34174907
Alignment:
Q  103 aaagttgtagttgtatgataaagttataataaattgttactaaag 147  Q
    ||||||||||||| ||| |||| | ||||||||||||||||||||    
T  34174863 aaagttgtagttgcatgttaaaatcataataaattgttactaaag 34174907  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 103 - 147
Target Start/End: Complemental strand, 6799303 - 6799259
Alignment:
Q  103 aaagttgtagttgtatgataaagttataataaattgttactaaag 147  Q
    ||||||||||||| ||| |||| | ||||||||||||||||||||    
T  6799303 aaagttgtagttgcatgttaaaatcataataaattgttactaaag 6799259  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 103 - 147
Target Start/End: Complemental strand, 9062010 - 9061966
Alignment:
Q  103 aaagttgtagttgtatgataaagttataataaattgttactaaag 147  Q
    ||||||||||||| ||| |||| | ||||||||||||||||||||    
T  9062010 aaagttgtagttgcatgttaaaatcataataaattgttactaaag 9061966  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 103 - 147
Target Start/End: Complemental strand, 30964428 - 30964384
Alignment:
Q  103 aaagttgtagttgtatgataaagttataataaattgttactaaag 147  Q
    ||||||||||||| ||| |||| | ||||||||||||||||||||    
T  30964428 aaagttgtagttgcatgttaaaatcataataaattgttactaaag 30964384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 103 - 147
Target Start/End: Complemental strand, 30980240 - 30980196
Alignment:
Q  103 aaagttgtagttgtatgataaagttataataaattgttactaaag 147  Q
    ||||||||||||| ||| |||| | ||||||||||||||||||||    
T  30980240 aaagttgtagttgcatgttaaaatcataataaattgttactaaag 30980196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 103 - 147
Target Start/End: Complemental strand, 36678980 - 36678936
Alignment:
Q  103 aaagttgtagttgtatgataaagttataataaattgttactaaag 147  Q
    ||||||||||||||||| |||| | ||| ||||||||||||||||    
T  36678980 aaagttgtagttgtatgttaaaatcatactaaattgttactaaag 36678936  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 103 - 147
Target Start/End: Complemental strand, 38694715 - 38694671
Alignment:
Q  103 aaagttgtagttgtatgataaagttataataaattgttactaaag 147  Q
    ||||||||||||| ||| |||| | ||||||||||||||||||||    
T  38694715 aaagttgtagttgcatgttaaaatcataataaattgttactaaag 38694671  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 103 - 147
Target Start/End: Original strand, 43657491 - 43657535
Alignment:
Q  103 aaagttgtagttgtatgataaagttataataaattgttactaaag 147  Q
    ||||||||||||| ||| |||| | ||||||||||||||||||||    
T  43657491 aaagttgtagttgcatgttaaaatcataataaattgttactaaag 43657535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 103 - 147
Target Start/End: Original strand, 2657032 - 2657076
Alignment:
Q  103 aaagttgtagttgtatgataaagttataataaattgttactaaag 147  Q
    ||||||| ||||| ||| |||||| ||||||||||||||||||||    
T  2657032 aaagttgcagttgcatgttaaagtcataataaattgttactaaag 2657076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 103 - 147
Target Start/End: Original strand, 11788847 - 11788891
Alignment:
Q  103 aaagttgtagttgtatgataaagttataataaattgttactaaag 147  Q
    ||||||||||||| ||| |||| | ||||||||||||||||||||    
T  11788847 aaagttgtagttgcatgttaaaatcataataaattgttactaaag 11788891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 103 - 147
Target Start/End: Original strand, 35048857 - 35048901
Alignment:
Q  103 aaagttgtagttgtatgataaagttataataaattgttactaaag 147  Q
    ||||||||||||| ||| |||| | ||||||||||||||||||||    
T  35048857 aaagttgtagttgcatgttaaaatcataataaattgttactaaag 35048901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 103 - 147
Target Start/End: Original strand, 42969260 - 42969304
Alignment:
Q  103 aaagttgtagttgtatgataaagttataataaattgttactaaag 147  Q
    ||||||||||||| ||| |||| | ||||||||||||||||||||    
T  42969260 aaagttgtagttgcatgttaaaatcataataaattgttactaaag 42969304  T

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