View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1528_low_7 (Length: 400)
Name: NF1528_low_7
Description: NF1528
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1528_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 115 - 389
Target Start/End: Complemental strand, 44650141 - 44649868
Alignment:
| Q |
115 |
acaataatcaatcgctannnnnnnaaaggatcaaacaatcacctggtctttgttaattgttagatttcttattatttttccgttaaatggaaattgtcat |
214 |
Q |
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| T |
44650141 |
acaataatcaatcgctatttttttaaaggatcaaacaatcacctggtctttgttaattgttagatttcttattatttttccgttaaatggaaattgtcat |
44650042 |
T |
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| Q |
215 |
attcaaatcgtgtgtatcctctnnnnnnnnntcatgtgaatatgtagcaaactttttgataaagaaatccttaatttacaaaccccatgtagcttatgca |
314 |
Q |
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| T |
44650041 |
attcaaatcgtgtgtatcctctaaaaaaaa-tcatgtgaatatgtagcaaactttttgataaagaaatccttaatttacaaaccccatgtagcttatgca |
44649943 |
T |
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| Q |
315 |
agaggatagtcaatagaacctaactccaaaccaaaacaagcaaattaataagacaaaaacttgtttacggttcat |
389 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44649942 |
agaggatagtcaatagaacctaacaccaaaccaaaacaagcaaattaataagacaaaaacttgtttacggttcat |
44649868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 44650270 - 44650167
Alignment:
| Q |
1 |
agtagctctatactagaagactca--tatatattcgcatgacaaatgatagaaatcaaacatctttgtaaagtttgagagttcccacctttaatcaaaca |
98 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44650270 |
agtagctctatactagaagactcagatatatattcgcatgacaaatgatagaaatcaaacatctttgtaaagtttgagagttcccacctttaatcaaaca |
44650171 |
T |
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| Q |
99 |
atcg |
102 |
Q |
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|||| |
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| T |
44650170 |
atcg |
44650167 |
T |
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