View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15290_low_1 (Length: 463)
Name: NF15290_low_1
Description: NF15290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15290_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 275; Significance: 1e-153; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 6 - 448
Target Start/End: Complemental strand, 37289615 - 37289174
Alignment:
| Q |
6 |
cacagagacttgcaaatagggtgccataagaaattcttatataaattatatcatatataagaggaagcttatatacttactagtcttatactagcaatgg |
105 |
Q |
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|||||||||||||||||||||||||||||||||||||| | ||||| ||||| |||||||||||||| |||||||||||||||||||||||||| ||||| |
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| T |
37289615 |
cacagagacttgcaaatagggtgccataagaaattcttctctaaat-atatcctatataagaggaagattatatacttactagtcttatactagaaatgg |
37289517 |
T |
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| Q |
106 |
gtggcggttaatgagttctaattaagttctaattgaacggg-agtactcgagctcgagccctaactgaaacaatcattggacagactttacttatttccc |
204 |
Q |
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| T |
37289516 |
atggtggttaatgagttctagttaagttctaattgaacggggagtactcgagttcgagccctaactgaaacaatcattggtcaggcttaacttatttccc |
37289417 |
T |
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| Q |
205 |
ccgagaaaccggaggtttaagaccaaaaaataccagaaataaactctaagtaatagnnnnnnnnnnnnnntaaggaagtgtataacttactcttgataaa |
304 |
Q |
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| T |
37289416 |
ccgagaaaccggaggtttaagaccaaaaattaccagaaa-------taagtaatagaaaaacaaaaaaaataaggaagtgtataacttactcttgataaa |
37289324 |
T |
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| Q |
305 |
taaagacaccaaccattcaaaatataaatttatgaatatgatata------tgtatgtgtgtatattcctccccaaaactaaacctgaaactgaaattga |
398 |
Q |
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||||||||||||||||||||||| ||||| ||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
37289323 |
taaagacaccaaccattcaaaatttaaatatatgaatatgatatatgtatgtgtatgtgtgtgtattcctccccaaaactaaacctgaaactgaaattga |
37289224 |
T |
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| Q |
399 |
acattgagaattaaagtttttgacaaataccttcaactgttccaataaat |
448 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37289223 |
acattaagaattaaagtttttgacaaataccttcaactgttccaataaat |
37289174 |
T |
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