View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15290_low_4 (Length: 208)
Name: NF15290_low_4
Description: NF15290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15290_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 173; Significance: 3e-93; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 7 - 187
Target Start/End: Original strand, 12843342 - 12843522
Alignment:
| Q |
7 |
atgtcgaagaaaataagtgcaatactcaacaagactaatatcaaacactatatgattctatttctacctctataggtgaaattaacactataatctctaa |
106 |
Q |
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| T |
12843342 |
atgtcaaacaaaataagtgcaatactcaacaagactaatatcaaacactatatgattctatttctacctctataggtgaaattaacactataatctctaa |
12843441 |
T |
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| Q |
107 |
aatgagttaagaacataagaatgattaatcgatcttaacagtagacattaacactataatcttgaatcttgattgaaattt |
187 |
Q |
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| T |
12843442 |
aatgagttaagaacataagaatgattaatcgatcttaacagtagacattaacactataatcttgaatcttgattgaaattt |
12843522 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 89 - 187
Target Start/End: Complemental strand, 12862057 - 12861959
Alignment:
| Q |
89 |
taacactataatctctaaaatgagttaagaacataagaatgattaatcgatcttaacagtagacattaacactataatcttgaatcttgattgaaattt |
187 |
Q |
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| T |
12862057 |
taacactataatctctaaaatgagttacgaacataagagtgattaatcgatcttaacagtagacattaacactataatcttgaatcttgattgaaattt |
12861959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 90 - 164
Target Start/End: Original strand, 13125763 - 13125837
Alignment:
| Q |
90 |
aacactataatctctaaaatgagttaagaacataagaatgattaatcgatcttaacagtagacattaacactata |
164 |
Q |
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| T |
13125763 |
aacactataatctctaaaatgagttaggaacataagagtgattaatcgatcttaacagtacacattaacactata |
13125837 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 13125539 - 13125587
Alignment:
| Q |
18 |
aataagtgcaatactcaacaagactaatatcaaacactatatgattcta |
66 |
Q |
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| T |
13125539 |
aataagtgcaatactcaacaacactaaaatcaaacactgtattattcta |
13125587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 186
Target Start/End: Original strand, 13125589 - 13125629
Alignment:
| Q |
146 |
agtagacattaacactataatcttgaatcttgattgaaatt |
186 |
Q |
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| T |
13125589 |
agtagacattaacactatgatcttgaatcttgatagaaatt |
13125629 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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