View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15291_high_3 (Length: 484)
Name: NF15291_high_3
Description: NF15291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15291_high_3 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 9 - 484
Target Start/End: Complemental strand, 7929834 - 7929348
Alignment:
| Q |
9 |
agtagcaaagggaaaaaacagaacaaattttgaggtttccttgttatgcgtgttaaccaatgttgtaaaaactggaccgaaccggtcggtactgtctgtt |
108 |
Q |
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| T |
7929834 |
agtagcaatgggaaaaaacagaacaaattttgaggtttccttgttatgcgtgttaaccaatgttgtaaaaactggaccgaaccggtcggtactgtctgtt |
7929735 |
T |
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| Q |
109 |
tgatggttggtttgatccca------------tactgtcnnnnnnnncatcttcatatggctcaaccgtggttgaactaattgaaattattgaatcacct |
196 |
Q |
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| T |
7929734 |
tgatggttggtttgatcccaattgtaccggaatactgtcttttttttt-tcttcatatggctcaaccgtggttgaactaattgaaattattgaatcacct |
7929636 |
T |
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| Q |
197 |
ggaggtcctactgtatcgatatccggtaacatttttctttgattaagcttaattgtttttgtatccgattttgagacgccattcaaatttcttagctgtt |
296 |
Q |
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|||||| ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7929635 |
ggaggttctactctatcaatatccggtaacatttttctttgattaagcttaattgtttttgtatccgattttgagacgccattcaaatttcttagctgtt |
7929536 |
T |
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| Q |
297 |
ttttcatatgttttgtcttgtctgaaccttagttcttttcatcctaattgatgcattaacatgtgactcatatataggtccaagacattcagctgaagta |
396 |
Q |
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|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
7929535 |
ttttcatatgatttgtcttgtctgaaccttacttcttttcatcctaattgatgcattcacatgtgactcatatataggtccaagacattcagctgaagta |
7929436 |
T |
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| Q |
397 |
ttagttgattccaaatttcagatatcaaccaagcgtgacaataattcaatgattttcaataaaccaataggcaaggaaattcctcttc |
484 |
Q |
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| T |
7929435 |
gtagttgattccaaatttcagatatcaaccaagcgtgaaaatgtttcaatgattttcaagaaaccaataggcaaggaaattccccttc |
7929348 |
T |
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