View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15291_high_4 (Length: 250)
Name: NF15291_high_4
Description: NF15291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15291_high_4 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 96; Significance: 3e-47; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 15 - 150
Target Start/End: Original strand, 12617046 - 12617181
Alignment:
| Q |
15 |
aagagaggaagaggttctagcttaggaacaaggcgttaagnnnnnnnncatttcattacacattacacactttgttggattggctttgatattaatatca |
114 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12617046 |
aagagagaaagaggttctagcttaggaacaaggcgttaaaaaaaaaaacatttcattacacattacacactttgttggattggctttgatattaatatca |
12617145 |
T |
|
| Q |
115 |
atatgcataatttagagattcaatcatgttaaatat |
150 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||||| |
|
|
| T |
12617146 |
atatgtataatatagagattcaatcatgttaaatat |
12617181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University