View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15291_high_6 (Length: 238)

Name: NF15291_high_6
Description: NF15291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15291_high_6
NF15291_high_6
[»] chr5 (1 HSPs)
chr5 (79-222)||(33468422-33468565)
[»] chr6 (3 HSPs)
chr6 (79-221)||(29681402-29681544)
chr6 (147-222)||(16124426-16124501)
chr6 (79-130)||(16122727-16122778)
[»] chr7 (2 HSPs)
chr7 (147-222)||(41626021-41626096)
chr7 (79-146)||(41625922-41625990)
[»] chr2 (2 HSPs)
chr2 (175-222)||(30600349-30600396)
chr2 (94-148)||(30600295-30600349)
[»] chr1 (2 HSPs)
chr1 (175-222)||(43730492-43730539)
chr1 (94-148)||(43730438-43730492)
[»] chr8 (2 HSPs)
chr8 (147-222)||(26490437-26490512)
chr8 (81-130)||(26490561-26490610)
[»] chr4 (1 HSPs)
chr4 (150-221)||(26824753-26824824)


Alignment Details
Target: chr5 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 79 - 222
Target Start/End: Original strand, 33468422 - 33468565
Alignment:
Q  79 tgttggtagactacaaaataattattagagttatattgcaaaattcatgtgttttgaataagcattatgtgacaacagttgctggatttatttggttacc 178  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |    
T  33468422 tgttggtagactacaaaataattattagagttatattgcaaaattcatgtgttttgaataagcatcatgtgacaacagttgctggatttatttggttatc 33468521  T
Q  179 aatcgatgggcaattaagtaaaaggttattaagaaagatatatc 222  Q
    |||| |||||||||||||||||||||||||||||||||||||||    
T  33468522 aatcaatgggcaattaagtaaaaggttattaagaaagatatatc 33468565  T

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Target: chr6 (Bit Score: 119; Significance: 6e-61; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 79 - 221
Target Start/End: Complemental strand, 29681544 - 29681402
Alignment:
Q  79 tgttggtagactacaaaataattattagagttatattgcaaaattcatgtgttttgaataagcattatgtgacaacagttgctggatttatttggttacc 178  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||    
T  29681544 tgttggttgactacaaaataattattagagttatattgcaaaattcatgtgttgcgaataagcattatgtgacaacagttgctggatttatttggttacc 29681445  T
Q  179 aatcgatgggcaattaagtaaaaggttattaagaaagatatat 221  Q
    |||| || ||||||||||||||| |||||||||||||||||||    
T  29681444 aatcaataggcaattaagtaaaaagttattaagaaagatatat 29681402  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 147 - 222
Target Start/End: Original strand, 16124426 - 16124501
Alignment:
Q  147 gtgacaacagttgctggatttatttggttaccaatcgatgggcaattaagtaaaaggttattaagaaagatatatc 222  Q
    ||||||| |||||||| ||||||||| ||| || || |||| |||||||||||||||  |||||||| ||||||||    
T  16124426 gtgacaatagttgctgaatttatttgattatcagtctatggacaattaagtaaaaggcaattaagaatgatatatc 16124501  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 79 - 130
Target Start/End: Original strand, 16122727 - 16122778
Alignment:
Q  79 tgttggtagactacaaaataattattagagttatattgcaaaattcatgtgt 130  Q
    ||||||| |||||||||||||||| |||||||| ||| | ||||||||||||    
T  16122727 tgttggtcgactacaaaataattagtagagttaaattacgaaattcatgtgt 16122778  T

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Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 147 - 222
Target Start/End: Original strand, 41626021 - 41626096
Alignment:
Q  147 gtgacaacagttgctggatttatttggttaccaatcgatgggcaattaagtaaaaggttattaagaaagatatatc 222  Q
    ||||||| |||||||| ||||||||| ||| |||| ||||||||||||||||||||   |||||||||||||||||    
T  41626021 gtgacaatagttgctgaatttatttgattatcaatggatgggcaattaagtaaaagacaattaagaaagatatatc 41626096  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 146
Target Start/End: Original strand, 41625922 - 41625990
Alignment:
Q  79 tgttggtagactacaaaataattattagagttatattgcaaaattcatgtgt-tttgaataagcattat 146  Q
    ||||||| ||||||||||||| || |||||||| ||| ||||| |||||||| |  |||||||||||||    
T  41625922 tgttggtcgactacaaaataactagtagagttaaattacaaaaatcatgtgtatgcgaataagcattat 41625990  T

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Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 175 - 222
Target Start/End: Original strand, 30600349 - 30600396
Alignment:
Q  175 taccaatcgatgggcaattaagtaaaaggttattaagaaagatatatc 222  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||    
T  30600349 taccaatctatgggcaattaagtaaaaggttattaagaaagatatatc 30600396  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 94 - 148
Target Start/End: Original strand, 30600295 - 30600349
Alignment:
Q  94 aaataattattagagttatattgcaaaattcatgtgttttgaataagcattatgt 148  Q
    ||||||||||||| |||||||||||||||||||||| |  |||||||||||||||    
T  30600295 aaataattattagggttatattgcaaaattcatgtgatgcgaataagcattatgt 30600349  T

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Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 175 - 222
Target Start/End: Original strand, 43730492 - 43730539
Alignment:
Q  175 taccaatcgatgggcaattaagtaaaaggttattaagaaagatatatc 222  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||    
T  43730492 taccaatctatgggcaattaagtaaaaggttattaagaaagatatatc 43730539  T

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Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 94 - 148
Target Start/End: Original strand, 43730438 - 43730492
Alignment:
Q  94 aaataattattagagttatattgcaaaattcatgtgttttgaataagcattatgt 148  Q
    ||||||||||||| ||||||||||||||||||||||||  |||||||||||||||    
T  43730438 aaataattattagggttatattgcaaaattcatgtgttgcgaataagcattatgt 43730492  T

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Target: chr8 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 147 - 222
Target Start/End: Complemental strand, 26490512 - 26490437
Alignment:
Q  147 gtgacaacagttgctggatttatttggttaccaatcgatgggcaattaagtaaaaggttattaagaaagatatatc 222  Q
    ||||||| |||||||| ||||||||| ||| || || ||||||||||||||||||||  ||||| |||||||||||    
T  26490512 gtgacaatagttgctgaatttatttgattatcagtctatgggcaattaagtaaaaggcaattaaaaaagatatatc 26490437  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 81 - 130
Target Start/End: Complemental strand, 26490610 - 26490561
Alignment:
Q  81 ttggtagactacaaaataattattagagttatattgcaaaattcatgtgt 130  Q
    ||||| |||||||||||||||| |||||||| ||| ||||||||||||||    
T  26490610 ttggttgactacaaaataattactagagttaaattacaaaattcatgtgt 26490561  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 150 - 221
Target Start/End: Original strand, 26824753 - 26824824
Alignment:
Q  150 acaacagttgctggatttatttggttaccaatcgatgggcaattaagtaaaaggttattaagaaagatatat 221  Q
    |||| |||||| | ||||||||| ||| || || ||||||||||||||||||||  ||||||||||||||||    
T  26824753 acaatagttgcggaatttatttgattatcagtctatgggcaattaagtaaaaggcaattaagaaagatatat 26824824  T

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