View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15291_low_1 (Length: 541)
Name: NF15291_low_1
Description: NF15291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15291_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 495; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 495; E-Value: 0
Query Start/End: Original strand, 18 - 532
Target Start/End: Original strand, 26950208 - 26950722
Alignment:
| Q |
18 |
gttaccaataatactagagcagccacacaaaagcatccacacgttgataagctaaaaaatcttagatcctgtcctgcctgcatagaccaaatgaacgatt |
117 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26950208 |
gttaccaataatactagagcagacacacaaaagcatccacacgttgataagctaaaaaatcttagatcctgtcctgcctgcatagaccaaatgaacgatt |
26950307 |
T |
|
| Q |
118 |
tagattttgtgttaattcccaatatggtctaataaagtaacaatatcagaaaacaaatcaatttagaggagcaagtttaattcaacaacaaaatttagaa |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| |
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| T |
26950308 |
tagattttgtgttaattcccaatatggtctaataaagtaacaatatcagaaaacaaatcaatttaaaggagcaagtttaattcaacagcaaaatttagaa |
26950407 |
T |
|
| Q |
218 |
gcacacaagacattgcttgaagttgaaggaagtccttaaaccgttattgaacttattgaacgtcctccttactcccccaaacagcctcatttttcaagga |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26950408 |
gcacacaagacattgcttgaagttgaaggaagtccttaaaccgttattgaacttattgaacgtcctccttactcccccaaacagcctcatttttcaagga |
26950507 |
T |
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| Q |
318 |
ttaggttttctgaacccgtacttatactaaaaatataggccaaatatatagccgactaattcaaatccaacccatcaaaactactagaatatcaaaattc |
417 |
Q |
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| T |
26950508 |
ttaggttttctgaacccgtacttatactaaaaatataggccaagtatatagccgactaattcaaatccaacccatcaaaactactagaatatcaaaattc |
26950607 |
T |
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| Q |
418 |
cttagataattggaatcctaataatctaacagaacataccaccaatgttccctccaggctgcgagtaggggctgtcacagctagtgcaacaaagaacgga |
517 |
Q |
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| T |
26950608 |
cttagataattggaatcctaataatctaacagaacataccagcaatgttccctccaggctgcgagtaggggctgtcacagctagtgcaacaaagaacgga |
26950707 |
T |
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| Q |
518 |
atcagtgtcctatgc |
532 |
Q |
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| T |
26950708 |
atcagtgtcctatgc |
26950722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 101
Target Start/End: Original strand, 27000659 - 27000742
Alignment:
| Q |
18 |
gttaccaataatactagagcagccacacaaaagcatccacacgttgataagctaaaaaatcttagatcctgtcctgcctgcata |
101 |
Q |
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|||||||||||||||||| || || ||||||||||||| | |||| ||||| | |||||| |||||| |||| ||||||||| |
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| T |
27000659 |
gttaccaataatactagaccattcaaacaaaagcatccagtcattgacaagcttataaatctaagatcccgtccagcctgcata |
27000742 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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