View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15291_low_2 (Length: 523)
Name: NF15291_low_2
Description: NF15291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15291_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 420; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 19 - 507
Target Start/End: Complemental strand, 1666669 - 1666182
Alignment:
| Q |
19 |
tgaagcaattcaaacaaaacaggaactatgcaagtcaagccaaataataacacagacaatatcaatgcgtaagagtgatactttctatggaaaatgcatg |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1666669 |
tgaagcaattcaaacaaaacaggaactatgcaagtcaagctaaataataacacagacaatatcaatgcgtaagagtgatactttctatggaaaatgcatg |
1666570 |
T |
|
| Q |
119 |
tacctcaggagccatgtaaccaagggttccagtttcaccagtcatgtcatgaggatttgaagcttcgatacgagctacaccaaaatcagcgattttcaac |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
1666569 |
tacctcaggagccatgtaaccaagggttccagtttcaccagtcatgtcatgaggattcgaagcttcgatacgagctacaccaaaatcagcgattttcaac |
1666470 |
T |
|
| Q |
219 |
gttcgtgtcttgtctagaagcatgttttctgttttaacatctctgtggacaatcttcttcatgtggagataactcaacctatataaagtnnnnnnnntga |
318 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
1666469 |
gttcgtgtcttgtctagaagcatgttttctgttttaacatctctgtggacaatcttcttcatgtggagataactcaacctatataaagtaaaaaaaatga |
1666370 |
T |
|
| Q |
319 |
annnnnnnnaggattatagaaagaaaatttatcatgttaattaaacttatatgacgtagattaggcatatggattggaccctcttgcaaggtcaagagct |
418 |
Q |
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| ||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1666369 |
a-tttttttaggattatagaaagaaaatttattatgttaattaaacttatatgacatagattaggcatatggattggaccctcttgcaaggtcaagagct |
1666271 |
T |
|
| Q |
419 |
agttgaacaaccactttaaaagccagcttccttcttcggtttttaattagatacgacttcaaagcaccaccaggacaatactcaacaac |
507 |
Q |
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| T |
1666270 |
agttgaacaaccactttaaaagccagcttccttcttcggtttttaattagatacgacttcaaagcaccaccaggacaatactcaacaac |
1666182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 120 - 276
Target Start/End: Complemental strand, 35191485 - 35191329
Alignment:
| Q |
120 |
acctcaggagccatgtaaccaagggttccagtttcaccagtcatgtcatgaggatttgaagcttcgatacgagctacaccaaaatcagcgattttcaacg |
219 |
Q |
| |
|
||||||||||||||||||||||| || ||||| || || |||||||||| ||||| || ||||| ||||| || || ||||||||||| ||||| | | |
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| T |
35191485 |
acctcaggagccatgtaaccaagtgtaccagtctccccggtcatgtcatttggattcgacgcttcaatacgtgcaacgccaaaatcagcaattttaacgg |
35191386 |
T |
|
| Q |
220 |
ttcgtgtcttgtctagaagcatgttttctgttttaacatctctgtggacaatcttct |
276 |
Q |
| |
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| || | ||| || | |||||||| ||||| || |||||||||||||||||||||| |
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| T |
35191385 |
tgcgagacttatccaacagcatgttctctgtctttacatctctgtggacaatcttct |
35191329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 120 - 298
Target Start/End: Complemental strand, 43974418 - 43974240
Alignment:
| Q |
120 |
acctcaggagccatgtaaccaagggttccagtttcaccagtcatgtcatgaggatttgaagcttcgatacgagctacaccaaaatcagcgattttcaacg |
219 |
Q |
| |
|
||||| |||||||| |||||||||||||| || || || ||||| |||| ||||||||| || |||| || || || ||||||||||| ||||| | | |
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| T |
43974418 |
acctctggagccatataaccaagggttccggtctccccggtcatatcattaggatttgacgcctcgactcgtgcaaccccaaaatcagcaattttaactg |
43974319 |
T |
|
| Q |
220 |
ttcgtgtcttgtctagaagcatgttttctgttttaacatctctgtggacaatcttcttcatgtggagataactcaacct |
298 |
Q |
| |
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| || ||||| || || ||||||||||| || || ||||||||||| |||||||||| ||| |||||||||||||| |
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| T |
43974318 |
tgcgggtcttatccagcagcatgttttcggtcttcacatctctgtgaacaatcttctgagagtgaagataactcaacct |
43974240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 119 - 208
Target Start/End: Complemental strand, 985461 - 985372
Alignment:
| Q |
119 |
tacctcaggagccatgtaaccaagggttccagtttcaccagtcatgtcatgaggatttgaagcttcgatacgagctacaccaaaatcagc |
208 |
Q |
| |
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||||||||||||||| || |||||||||||||||||||||||||||||| ||||| ||||||| | ||||| || ||||||||||| |
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| T |
985461 |
tacctcaggagccatatatccaagggttccagtttcaccagtcatgtcacttggattcaaagcttcaacccgagcaactccaaaatcagc |
985372 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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