View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15292_low_1 (Length: 364)

Name: NF15292_low_1
Description: NF15292
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15292_low_1
NF15292_low_1
[»] chr5 (1 HSPs)
chr5 (1-351)||(25471431-25471781)
[»] chr7 (2 HSPs)
chr7 (52-345)||(9270540-9270829)
chr7 (116-153)||(26168712-26168749)
[»] scaffold0121 (1 HSPs)
scaffold0121 (50-345)||(25256-25547)
[»] chr4 (4 HSPs)
chr4 (49-345)||(47507487-47507779)
chr4 (203-272)||(50938752-50938821)
chr4 (189-246)||(56476111-56476168)
chr4 (102-134)||(30176437-30176469)
[»] scaffold0477 (1 HSPs)
scaffold0477 (48-345)||(69-363)
[»] chr6 (2 HSPs)
chr6 (48-345)||(4649052-4649346)
chr6 (198-321)||(34417210-34417333)
[»] chr8 (2 HSPs)
chr8 (104-343)||(5337619-5337855)
chr8 (51-147)||(24194599-24194695)
[»] scaffold0057 (1 HSPs)
scaffold0057 (56-345)||(7538-7828)
[»] chr3 (3 HSPs)
chr3 (104-345)||(43731564-43731805)
chr3 (203-321)||(32812935-32813053)
chr3 (187-291)||(26701306-26701410)
[»] chr1 (1 HSPs)
chr1 (119-159)||(3906944-3906984)


Alignment Details
Target: chr5 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 1 - 351
Target Start/End: Original strand, 25471431 - 25471781
Alignment:
1 ctattctcatctattataagttataagcatcttcaattcttctatagactgaccatgtgaaaacacaacatttggcaaatatatgccaacattcgttaac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
25471431 ctattctcatctattataagttataagcatcttcaattcttctatggactgaccatgtgaaaacacaacatttggcaaatatatgccaacattcgttaac 25471530  T
101 tattgtctttggcttttgttaatagtcattgcaaatgaaacaactatcagaaattgtctctattgaattaaacataaaagaaatcctaacatctgaaggt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
25471531 tattgtctttggcttttgttaatagtcattgcaaatgaaacaactatcagaaattgtctctattgaattaaacataaaagaaatcctaacatctgaaggt 25471630  T
201 gtaagagataaccttggtataaaaactttttcgcctatattacttctacatatgaccttcccttcaagaacatacttacccattctagttattatcagtc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
25471631 gtaagagataaccttggtataaaaactttttcgcctatattacttctacatatgaccttcccttcaagaacatacttacccattctagttattatcagtc 25471730  T
301 ttgtaccgttgaataatcctactctttgatctatattccttaacatctctg 351  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
25471731 ttgtaccgttgaataatcctactctttgatctatattccttaacatctctg 25471781  T

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Target: chr7 (Bit Score: 85; Significance: 2e-40; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 52 - 345
Target Start/End: Complemental strand, 9270829 - 9270540
Alignment:
52 accatgtgaaaacacaacatttggcaaatatatgccaacattcgttaactattgtctttggcttttgttaatagtcattgcaaatgaaacaactatcaga 151  Q
    ||||||||||||||||||||||| ||||||||| ||||||||| ||||  |||||   |  |||||||||||||| ||||| |||||||||||||||  |    
9270829 accatgtgaaaacacaacatttgacaaatatatcccaacattctttaaagattgttactaacttttgttaatagttattgcgaatgaaacaactatcgaa 9270730  T
152 aattgtctctattgaattaaacataaaagaaatcctaacatctgaaggtgtaagagataaccttggtataaaaactttttcgcctatattacttctacat 251  Q
    ||||||||| ||| || |     | |||| | |  | || || ||||||||||||||||| |||||||||||| |||| || ||||||||||||  | ||    
9270729 aattgtctccattaaaatt----tgaaaggagtattgacgtcggaaggtgtaagagataatcttggtataaaatctttctcacctatattactttcagat 9270634  T
252 atgaccttcccttcaagaacatacttacccattctagttattatcagtcttgtaccgttgaataatcctactctttgatctatattccttaaca 345  Q
    |||||||| || ||||| ||| |  ||| |||||| |||||||  ||||||||||| |||||||| |||  ||| |||||||||||||||||||    
9270633 atgacctttccatcaagcacaaatatacacattcttgttattagtagtcttgtaccattgaataaccctgatctgtgatctatattccttaaca 9270540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 153
Target Start/End: Complemental strand, 26168749 - 26168712
Alignment:
116 ttgttaatagtcattgcaaatgaaacaactatcagaaa 153  Q
    ||||||||||||||||||||||| |||| |||||||||    
26168749 ttgttaatagtcattgcaaatgagacaaatatcagaaa 26168712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0121 (Bit Score: 79; Significance: 7e-37; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 50 - 345
Target Start/End: Complemental strand, 25547 - 25256
Alignment:
50 tgaccatgtgaaaacacaacatttggcaaatatatgccaacattcgttaactattgtctttggcttttgttaatagtcattgcaaatgaaacaactatca 149  Q
    ||||||||||||||||||  | |||| ||||||||  |||| ||| | ||  | |||| ||| |||||||||||||||||||| || ||||||||||||     
25547 tgaccatgtgaaaacacatgacttggaaaatatatctcaactttcttcaaagactgtccttgacttttgttaatagtcattgcgaaagaaacaactatcg 25448  T
150 gaaattgtctctattgaattaaacataaaagaaatcctaacatctgaaggtgtaagagataaccttggtataaaaactttttcgcctatattacttctac 249  Q
     ||| ||||||  ||||| |     ||||||  ||| | ||||| ||||| ||||||||||| ||||||||||||| ||| | || |||||| |||| |     
25447 aaaactgtctccgttgaaatt----taaaaggtatcatgacatcagaaggagtaagagataatcttggtataaaaaatttcttgcatatattgcttcgaa 25352  T
250 atatgaccttcccttcaagaacatacttacccattctagttattatcagtcttgtaccgttgaataatcctactctttgatctatattccttaaca 345  Q
    ||||||| || |||||||| ||| | |||||||||||||| || || |||||||| || ||| ||||||||  |||||||||||||||||||||||    
25351 atatgacatttccttcaagcacaaatttacccattctagtaatgattagtcttgtgccattgcataatcctgatctttgatctatattccttaaca 25256  T

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Target: chr4 (Bit Score: 76; Significance: 4e-35; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 49 - 345
Target Start/End: Complemental strand, 47507779 - 47507487
Alignment:
49 ctgaccatgtgaaaacacaacatttggcaaatatatgccaacattcgttaactattgtctttggcttttgttaatagtcattgcaaatgaaacaactatc 148  Q
    |||||| |||||||||| |  | |||||| ||||||  |||||||| ||||  |||||| ||| || ||||||||||||||||| |||||||||||||||    
47507779 ctgaccgtgtgaaaacataggacttggcagatatatatcaacattctttaaagattgtccttgactcttgttaatagtcattgcgaatgaaacaactatc 47507680  T
149 agaaattgtctctattgaattaaacataaaagaaatcctaacatctgaaggtgtaagagataaccttggtataaaaactttttcgcctatattacttcta 248  Q
    ||||| ||||||  ||||| |     | |||| | |||| || || ||| ||| ||| ||||| ||||||||||||||||| |||||||||||||||| |    
47507679 agaaactgtctccgttgaaatt----tgaaaggagtcctgacgtcggaacgtgcaagggataatcttggtataaaaactttctcgcctatattacttcga 47507584  T
249 catatgaccttcccttcaagaacatacttacccattctagttattatcagtcttgtaccgttgaataatcctactctttgatctatattccttaaca 345  Q
     ||||||  || |||||||  ||| | ||||||||  |  ||||||| ||||||||||| ||| |||| | |  |||||||||||||||||||||||    
47507583 gatatgagatttccttcaaacacaaatttacccatcatgattattattagtcttgtaccattgcataagcgtgatctttgatctatattccttaaca 47507487  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 203 - 272
Target Start/End: Original strand, 50938752 - 50938821
Alignment:
203 aagagataaccttggtataaaaactttttcgcctatattacttctacatatgaccttcccttcaagaaca 272  Q
    |||||||||||| ||||| |||||||||||||| || ||||||| | |||| |||||  |||||||||||    
50938752 aagagataacctgggtatgaaaactttttcgccgatgttacttccatatataacctttgcttcaagaaca 50938821  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 246
Target Start/End: Original strand, 56476111 - 56476168
Alignment:
189 acatctgaaggtgtaagagataaccttggtataaaaactttttcgcctatattacttc 246  Q
    ||||||||||| |  |||||||||||||||||||| ||||| || || ||||||||||    
56476111 acatctgaaggagatagagataaccttggtataaacactttgtcaccgatattacttc 56476168  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 102 - 134
Target Start/End: Original strand, 30176437 - 30176469
Alignment:
102 attgtctttggcttttgttaatagtcattgcaa 134  Q
    |||||||||| ||||||||||||||||||||||    
30176437 attgtctttgacttttgttaatagtcattgcaa 30176469  T

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Target: scaffold0477 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: scaffold0477
Description:

Target: scaffold0477; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 48 - 345
Target Start/End: Original strand, 69 - 363
Alignment:
48 actgaccatgtgaaaacacaacatttggcaaatatatgccaacattcgttaactattgtctttggcttttgttaatagtcattgcaaatgaaacaactat 147  Q
    ||||||||||||||||||||| ||||||||||||||| ||||| ||| | |   | |||| ||| ||||||||| |||||||||| |  |||||||||||    
69 actgaccatgtgaaaacacaaaatttggcaaatatatcccaactttcttcagagactgtccttgacttttgttagtagtcattgcgagagaaacaactat 168  T
148 cagaaattgtctctattgaattaaacataaaagaaatcctaacatctgaaggtgtaagagataaccttggtataaaaactttttcgcctatattacttct 247  Q
    | |||  ||||||  ||||| |   |    |||  ||| | ||||| ||||  ||||||||||| |||| ||||||||| || || |||||||| ||||     
169 cggaatatgtctccgttgaaatttgct---aaggtatcttgacatcagaagaagtaagagataatcttgatataaaaacgttctcacctatattgcttcc 265  T
248 acatatgaccttcccttcaagaacatacttacccattctagttattatcagtcttgtaccgttgaataatcctactctttgatctatattccttaaca 345  Q
    | |||||||||| |||||||| ||| | ||||||||| | ||||  || ||||||||  | ||| ||||||||  |||||||||||||||||||||||    
266 agatatgacctttccttcaagcacaaatttacccattatggttacgattagtcttgtgtcattgcataatcctgatctttgatctatattccttaaca 363  T

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Target: chr6 (Bit Score: 64; Significance: 6e-28; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 48 - 345
Target Start/End: Original strand, 4649052 - 4649346
Alignment:
48 actgaccatgtgaaaacacaacatttggcaaatatatgccaacattcgttaactattgtctttggcttttgttaatagtcattgcaaatgaaacaactat 147  Q
    ||||||||||||||||||||| ||||||||||||||| ||||| ||| | |   | |||| ||| ||||||||| |||||||||| |  |||||||||||    
4649052 actgaccatgtgaaaacacaaaatttggcaaatatatcccaactttcttcagagactgtccttgacttttgttagtagtcattgcgagagaaacaactat 4649151  T
148 cagaaattgtctctattgaattaaacataaaagaaatcctaacatctgaaggtgtaagagataaccttggtataaaaactttttcgcctatattacttct 247  Q
    | |||  ||||||  ||||| |   |    |||  ||| | ||||| ||||  ||||||||||| |||| ||||||||| || || |||||||| ||||     
4649152 cggaatatgtctccgttgaaatttgct---aaggtatcttgacatcagaagaagtaagagataatcttgatataaaaacgttctcacctatattgcttcc 4649248  T
248 acatatgaccttcccttcaagaacatacttacccattctagttattatcagtcttgtaccgttgaataatcctactctttgatctatattccttaaca 345  Q
    | |||||||||| |||||||| ||| | ||||||||| | ||||  || ||||||||  | ||| ||||||||  |||||||||||||||||||||||    
4649249 agatatgacctttccttcaagcacaaatttacccattatggttacgattagtcttgtgtcattgcataatcctgatctttgatctatattccttaaca 4649346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 198 - 321
Target Start/End: Original strand, 34417210 - 34417333
Alignment:
198 ggtgtaagagataaccttggtataaaaactttttcgcctatattacttctacatatgaccttcccttcaagaacatacttacccattctagttattatca 297  Q
    |||| |||||||||||| ||||| || ||||||||||| |||||||||| | | || ||| | |||||||||||| | || |||||||||||||| || |    
34417210 ggtgaaagagataacctgggtatgaacactttttcgccaatattacttccagaaataacccttccttcaagaacaaattttcccattctagttatgatta 34417309  T
298 gtcttgtaccgttgaataatccta 321  Q
      ||||| |||||| |||||||||    
34417310 accttgttccgttgcataatccta 34417333  T

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Target: chr8 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 104 - 343
Target Start/End: Complemental strand, 5337855 - 5337619
Alignment:
104 tgtctttggcttttgttaatagtcattgcaaatgaaacaactatcagaaattgtctctattgaattaaacataaaagaaatcctaacatctgaaggtgta 203  Q
    |||| ||| |||||||||||||||||||| || |||||||||||| |||| ||||||  ||||| |     | ||||  ||| | ||||| ||||| |||    
5337855 tgtccttgacttttgttaatagtcattgcgaaagaaacaactatcggaaactgtctccgttgaaatt----tgaaaggtatcatgacatcagaaggagta 5337760  T
204 agagataaccttggtataaaaactttt-tcgcctatattacttctacatatgaccttcccttcaagaacatacttacccattctagttattatcagtctt 302  Q
    |||||||| ||| |||||||||  ||| | || |||||| |||| | |||||||||| |||||||| | | | ||||| ||||||||||| || ||||||    
5337759 agagataatcttagtataaaaaaatttcttgcatatattgcttcgaaatatgacctttccttcaagcataaatttaccaattctagttatgattagtctt 5337660  T
303 gtaccgttgaataatcctactctttgatctatattccttaa 343  Q
    || || ||| ||||||||  |||||||||||||||||||||    
5337659 gtgccattgcataatcctgatctttgatctatattccttaa 5337619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 51 - 147
Target Start/End: Complemental strand, 24194695 - 24194599
Alignment:
51 gaccatgtgaaaacacaacatttggcaaatatatgccaacattcgttaactattgtctttggcttttgttaatagtcattgcaaatgaaacaactat 147  Q
    |||||||||||||||||  | |||| |||||||| |||||  |  |||   |||||| ||| |||||||||||||||||||| || |||||||||||    
24194695 gaccatgtgaaaacacaggacttggtaaatatatcccaactatttttagagattgtcattgacttttgttaatagtcattgcgaaagaaacaactat 24194599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 56 - 345
Target Start/End: Original strand, 7538 - 7828
Alignment:
56 tgtgaaaacacaacatttggcaaatatatgccaacattcgttaactattgtctttggcttttgttaatagtcattgcaaatgaaa-caactatcagaaat 154  Q
    ||||||||||||  | |||||| |||||| ||||  ||| ||||  |||||||||  |||||||||||||||||||  ||||||| |  ||||||||||     
7538 tgtgaaaacacaggacttggcagatatatcccaaagttctttaaagattgtctttaacttttgttaatagtcattgtgaatgaaaacggctatcagaaac 7637  T
155 tgtctct-attgaattaaacataaaagaaatcctaacatctgaaggtgtaagagataaccttggtataaaaactttttcgcctatattacttctacatat 253  Q
    ||||||  |||||| |     | |||| |||||| |  || ||||||| ||||||||| ||| ||||||||||||| |||||||||||||||| | ||||    
7638 tgtctcccattgaaatt----tgaaaggaatcctgatgtcggaaggtgcaagagataatcttagtataaaaactttctcgcctatattacttccagatat 7733  T
254 gaccttcccttcaagaacatacttacccattctag---ttattatcagtcttgtaccgttgaataatcctactctttgatctatattccttaaca 345  Q
    | | || |||||||| ||| | |||| ||| || |   ||||||| ||||||||||| ||| |||| |||  | |||||||||||||||||||||    
7734 ggcatttccttcaagcacaaatttactcatcctggttattattattagtcttgtaccattgcataagccttatatttgatctatattccttaaca 7828  T

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Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 104 - 345
Target Start/End: Original strand, 43731564 - 43731805
Alignment:
104 tgtctttggcttttgttaatagtcattgcaaatgaaacaactatcagaaattgtctctattgaattaaacataaaagaaatcctaacatctgaaggtgta 203  Q
    |||| ||| ||||||||||||||||||||||| |||||| ||||| ||| |||||||  ||||| |     | ||||  ||| | ||||| ||||| |||    
43731564 tgtccttgacttttgttaatagtcattgcaaaagaaacagctatcggaacttgtctccgttgaaatt----tgaaaggtatcatgacatcagaaggagta 43731659  T
204 agagataaccttggtataaaaact-----ttttcgcctatattacttctacatatgaccttcccttcaagaacatacttacccattctagttattatcag 298  Q
    |||||||| |||||||||||||       || | || |||||| |||| | |||||||||| |||||||| ||| | ||| ||||||||||||| || ||    
43731660 agagataatcttggtataaaaaaaaaaaattcttgcatatattgcttcga-atatgacctttccttcaagcacaaatttatccattctagttatgattag 43731758  T
299 tcttgtaccgttgaataatcctactctttgatctatattccttaaca 345  Q
    ||||||  | ||| ||||||||  |||||||||||||||||||||||    
43731759 tcttgtgtcattgcataatcctgatctttgatctatattccttaaca 43731805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 321
Target Start/End: Original strand, 32812935 - 32813053
Alignment:
203 aagagataaccttggtataaaaactttttcgcctatattacttctacatatgaccttcccttcaagaacatacttacccattctagttattatcagtctt 302  Q
    ||||||||||||  ||||||||||||| || || | |||||||| | |||| || || |||||||| ||| |||| ||||| |||||||| || | ||||    
32812935 aagagataacctgagtataaaaactttctcaccaacattacttccaaatatcacttttccttcaagcacaaactttcccatcctagttatgattaatctt 32813034  T
303 gtaccgttgaataatccta 321  Q
    || || ||| |||||||||    
32813035 gttccattgcataatccta 32813053  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 291
Target Start/End: Original strand, 26701306 - 26701410
Alignment:
187 taacatctgaaggtgtaagagataaccttggtataaaaactttttcgcctatattacttctacatatgaccttcccttcaagaacatacttacccattct 286  Q
    ||||||| || |||| |||||||||||| ||||| |||||||||||||| || ||||||| | |||  ||||| |||||| | ||| | || ||||||||    
26701306 taacatcagatggtgaaagagataacctgggtatgaaaactttttcgccaatgttacttcgagatacaacctttccttcatgtacaaatttccccattct 26701405  T
287 agtta 291  Q
     ||||    
26701406 ggtta 26701410  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 119 - 159
Target Start/End: Original strand, 3906944 - 3906984
Alignment:
119 ttaatagtcattgcaaatgaaacaactatcagaaattgtct 159  Q
    ||||||||||||||||||||||||||||   ||||||||||    
3906944 ttaatagtcattgcaaatgaaacaactaaatgaaattgtct 3906984  T

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