View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15292_low_2 (Length: 249)

Name: NF15292_low_2
Description: NF15292
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15292_low_2
NF15292_low_2
[»] chr2 (7 HSPs)
chr2 (1-239)||(492402-492639)
chr2 (1-90)||(492930-493017)
chr2 (1-91)||(490670-490758)
chr2 (151-190)||(24218385-24218424)
chr2 (149-192)||(18699771-18699814)
chr2 (149-195)||(26244128-26244174)
chr2 (149-195)||(45719670-45719716)
[»] chr1 (2 HSPs)
chr1 (4-91)||(36080031-36080117)
chr1 (149-195)||(14974272-14974318)
[»] chr3 (2 HSPs)
chr3 (7-91)||(49433914-49433997)
chr3 (146-197)||(16174391-16174442)
[»] chr7 (1 HSPs)
chr7 (150-190)||(13061383-13061423)


Alignment Details
Target: chr2 (Bit Score: 207; Significance: 1e-113; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 492639 - 492402
Alignment:
Q  1 caccttcttccttttttcccctggctccttaatcctctccatttcatttacgggtcagctaaatggtttctttgccaaagtccaattgtcagttgcctat 100  Q
    |||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  492639 caccttcttccttttttccc-tggctccttaatcctctccattccatttacgggtcagctaaatggtttcttggccaaagtccaattgtcagttgcctat 492541  T
Q  101 caacggagcttatctgatcatgttcctttgatgttaataattgaagaagctaattggggacctcggccgcttcggatgcttaaatgttggtcggaatttc 200  Q
    |||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  492540 caacggggcttatctgatcatgttcctttgatgttaataactgaagaagctaattggggacctcggccgcttcggatgcttaaatgttggtcgaaatttc 492441  T
Q  201 tagggtacggtgattttgtccgagaaaaatggggttctt 239  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  492440 tagggtatggtgattttgtccgagaaaaatggggttctt 492402  T

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Target: chr2; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 492930 - 493017
Alignment:
Q  1 caccttcttccttttttcccctggctccttaatcctctccatttcatttacgggtcagctaaatggtttctttgccaaagtccaattgtc 90  Q
    |||||||||||||||||||  ||||||||||||||||| |||||||||||||| |||||||||||||||| |||||||||||||||||||    
T  492930 caccttcttccttttttcct-tggctccttaatcctcttcatttcatttacggatcagctaaatggtttc-ttgccaaagtccaattgtc 493017  T

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Target: chr2; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 490670 - 490758
Alignment:
Q  1 caccttcttccttttttcccctggctccttaatcctctccatttcatttacgggtcagctaaatggtttctttgccaaagtccaattgtca 91  Q
    |||||||||||||||||||| | ||||||||||||||| |||||||||||| |||||| ||||||||||| ||||||||||||||||||||    
T  490670 caccttcttccttttttccc-tcgctccttaatcctcttcatttcatttacaggtcagttaaatggtttc-ttgccaaagtccaattgtca 490758  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 151 - 190
Target Start/End: Original strand, 24218385 - 24218424
Alignment:
Q  151 taattggggacctcggccgcttcggatgcttaaatgttgg 190  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  24218385 taattggggacctcgtccgcttcggatgcttaaatgttgg 24218424  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 149 - 192
Target Start/End: Complemental strand, 18699814 - 18699771
Alignment:
Q  149 gctaattggggacctcggccgcttcggatgcttaaatgttggtc 192  Q
    ||||||||||| |||||||||||||  |||||||||||||||||    
T  18699814 gctaattggggccctcggccgcttcatatgcttaaatgttggtc 18699771  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 195
Target Start/End: Original strand, 26244128 - 26244174
Alignment:
Q  149 gctaattggggacctcggccgcttcggatgcttaaatgttggtcgga 195  Q
    ||||||||||||||||||||  |  ||||||||||||||||||||||    
T  26244128 gctaattggggacctcggcctttgaggatgcttaaatgttggtcgga 26244174  T

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Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 195
Target Start/End: Complemental strand, 45719716 - 45719670
Alignment:
Q  149 gctaattggggacctcggccgcttcggatgcttaaatgttggtcgga 195  Q
    ||||||||||||||||||||  |  ||||||||||||||||||||||    
T  45719716 gctaattggggacctcggcctttgaggatgcttaaatgttggtcgga 45719670  T

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Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 4 - 91
Target Start/End: Complemental strand, 36080117 - 36080031
Alignment:
Q  4 cttcttccttttttcccctggctccttaatcctctccatttcatttacgggtcagctaaatggtttctttgccaaagtccaattgtca 91  Q
    ||||||||||||||||| || ||||||||||||||||||||||||||||||||| |||||| ||||||| |||||||| |||||||||    
T  36080117 cttcttccttttttccc-tgactccttaatcctctccatttcatttacgggtcaactaaattgtttcttggccaaagttcaattgtca 36080031  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 195
Target Start/End: Original strand, 14974272 - 14974318
Alignment:
Q  149 gctaattggggacctcggccgcttcggatgcttaaatgttggtcgga 195  Q
    ||||||||||||||||||||  |  ||||||||||||||||||||||    
T  14974272 gctaattggggacctcggcctttgaggatgcttaaatgttggtcgga 14974318  T

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Target: chr3 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 7 - 91
Target Start/End: Complemental strand, 49433997 - 49433914
Alignment:
Q  7 cttccttttttcccctggctccttaatcctctccatttcatttacgggtcagctaaatggtttctttgccaaagtccaattgtca 91  Q
    ||||||||||| || | ||||||||||||||||||||||||||  |||||||||| || ||||||| ||||||||||||||||||    
T  49433997 cttcctttttttcc-tagctccttaatcctctccatttcatttttgggtcagctagatagtttcttggccaaagtccaattgtca 49433914  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 146 - 197
Target Start/End: Original strand, 16174391 - 16174442
Alignment:
Q  146 gaagctaattggggacctcggccgcttcggatgcttaaatgttggtcggaat 197  Q
    ||||||||||||||||||| |||  | |||||||||||||||||||| ||||    
T  16174391 gaagctaattggggacctctgcctttgcggatgcttaaatgttggtctgaat 16174442  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 190
Target Start/End: Original strand, 13061383 - 13061423
Alignment:
Q  150 ctaattggggacctcggccgcttcggatgcttaaatgttgg 190  Q
    |||||||||||||||| ||||| | ||||||||||||||||    
T  13061383 ctaattggggacctcgtccgctccagatgcttaaatgttgg 13061423  T

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