View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15293_high_1 (Length: 557)
Name: NF15293_high_1
Description: NF15293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15293_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 287 - 547
Target Start/End: Original strand, 35674250 - 35674510
Alignment:
| Q |
287 |
ataatttaatattttggtatacattgtataattcaattttgaatcatcagcaatgaaaattcaaatttgaaaacgccgtagtttgaacaaagcttcaaaa |
386 |
Q |
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| T |
35674250 |
ataatttaatattttggtatacattgtataattcaattttgaatcatcagcaatgaaaattcaaatttgaaaacgccgtagtttgaacaaagcttcaaaa |
35674349 |
T |
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| Q |
387 |
actaaggttataacaaattgtattttttaaaacaaatgttttctgtatgatggattattaattatctgaatgagccatcttttagttgctcacatgataa |
486 |
Q |
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| T |
35674350 |
actaaggttataacaaattgtattttttaaaacaaatgttttctgtatgagggattattaattatctgaatgagccatcttttagttgctcacatgataa |
35674449 |
T |
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| Q |
487 |
acgagagatgttatgttggtggttttttctttataaaatgttatgttggtggtgttatttt |
547 |
Q |
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| T |
35674450 |
acgagagatgttatgttggtggttttttctttataaaatgttatgttggtggtgttatttt |
35674510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 1 - 253
Target Start/End: Original strand, 35673997 - 35674254
Alignment:
| Q |
1 |
tttatgggatattgggatgtgtttataatttggattaagatgatcaagtgttcaaggaccaactgaaatgattatttaccnnnnnnnnn-----gtacgt |
95 |
Q |
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| T |
35673997 |
tttatgggatattgggatgtgtttataatttggattaagatgattaagtgttcaaggaccaactgaaatgattatttaccttttttttttttttgtacgt |
35674096 |
T |
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| Q |
96 |
ctactacttttctaattattagaaatttattttcttttagttagtgcctggtttgtggggataagcttatggggtaatgtcagattagtttgtctgcttt |
195 |
Q |
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| T |
35674097 |
ctactacttttctaattattagaaatttattttcttttagttagtgcctggtttgtggggataagcttatggggtaatgtcagattagtttgtctgcttt |
35674196 |
T |
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| Q |
196 |
gaattatttatgatcgcatgcaagtaccataattttgccacttaggtgcgtgtataat |
253 |
Q |
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| T |
35674197 |
gaattatttatgatcgcatgcaagtaccataattttgccacttagttgcgtgtataat |
35674254 |
T |
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