View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15293_high_3 (Length: 210)
Name: NF15293_high_3
Description: NF15293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15293_high_3 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 160; Significance: 2e-85; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 15 - 181
Target Start/End: Original strand, 23804970 - 23805137
Alignment:
| Q |
15 |
caaagggaaggttggtggtgaacaaattctaggtattgcactaaagaaagattcaagacttcattttgtccatccattttaggatggtagaaagtactca |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23804970 |
caaagggaaggttggtggtgaacaaattctaggtattgcactaaagaaagattcaagacttcattttgtccatccattttaggatggtagaaagtactca |
23805069 |
T |
|
| Q |
115 |
ttctcaacttgaacagtttgcgccaaatactattgatg-aagcatgatccatgtcagagactaatctt |
181 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
23805070 |
ttctcaacttgaacagtttgcgccaaatactattgatgaaagcatgatccatgtcagagactaatctt |
23805137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 15 - 181
Target Start/End: Complemental strand, 22983438 - 22983271
Alignment:
| Q |
15 |
caaagggaaggttggtggtgaacaaattctaggtattgcactaaagaaagattcaagacttcattttgtccatccattttaggatggtagaaagtactca |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22983438 |
caaagggaaggttggtggtgaacaaattctaggtattgcactaaagaaagattcaagacttcattttgtccatccattttaggatggtagaaagtactca |
22983339 |
T |
|
| Q |
115 |
ttctcaacttgaacagtttgcgccaaatactattgatg-aagcatgatccatgtcagagactaatctt |
181 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
22983338 |
ttctcaacttgaacagtttgcgccaaataatattgatgaaagcatgatccatgtcagagactaatctt |
22983271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 15 - 187
Target Start/End: Original strand, 22883377 - 22883550
Alignment:
| Q |
15 |
caaagggaaggttggtggtgaacaaattctaggtattgcactaaagaaagattcaagacttcattttgtccatccattttaggatggtagaaagtactca |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22883377 |
caaagggaaggttggtggtgaacaaattctaggtattgcactaaagaaagattcaagacttcattttgtccatccattttaggatggtagaaagtactca |
22883476 |
T |
|
| Q |
115 |
ttctcaacttgaacagtttgcgccaaatactattgatg-aagcatgatccatgtcagagactaatcttgtaggt |
187 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| |||| ||||| |
|
|
| T |
22883477 |
ttctcaacttgaacagtttgcgccaaatattattgatgaaagcatgatccatgtcagagactagtcttctaggt |
22883550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 15 - 187
Target Start/End: Original strand, 22901307 - 22901480
Alignment:
| Q |
15 |
caaagggaaggttggtggtgaacaaattctaggtattgcactaaagaaagattcaagacttcattttgtccatccattttaggatggtagaaagtactca |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22901307 |
caaagggaaggttggtggtgaacaaattctaggtattgcactaaagaaagattcaagacttcattttgtccatccattttaggatggtagaaagtactca |
22901406 |
T |
|
| Q |
115 |
ttctcaacttgaacagtttgcgccaaatactattgatg-aagcatgatccatgtcagagactaatcttgtaggt |
187 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| |||| ||||| |
|
|
| T |
22901407 |
ttctcaacttgaacagtttgcgccaaatattattgatgaaagcatgatccatgtcagagactagtcttctaggt |
22901480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 15 - 187
Target Start/End: Original strand, 22916246 - 22916423
Alignment:
| Q |
15 |
caaagggaaggttggtggtgaacaaattctaggtattgcactaaa----gaaagattcaagacttcattttgtccatccattttaggatggtagaaagta |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| |||||| |||||||||||||||||||| |
|
|
| T |
22916246 |
caaagggaaggttggtggtgaacaaattctaggtattgcactatatatagaaagattcaagacttcattttatccatctattttaggatggtagaaagtg |
22916345 |
T |
|
| Q |
111 |
ctcattctcaacttgaacagtttgcgccaaatactattgatg-aagcatgatccatgtcagagactaatcttgtaggt |
187 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| |||| ||||| |
|
|
| T |
22916346 |
ctcattctcaacttgaacagtttgcgccaaatattattgatgaaagcatgatccatgtcagagactagtcttctaggt |
22916423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University