View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15294_high_11 (Length: 242)

Name: NF15294_high_11
Description: NF15294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15294_high_11
NF15294_high_11
[»] chr2 (8 HSPs)
chr2 (10-229)||(2787051-2787270)
chr2 (10-156)||(27737593-27737739)
chr2 (10-156)||(21797966-21798112)
chr2 (10-156)||(21803120-21803266)
chr2 (10-156)||(44801568-44801714)
chr2 (10-156)||(27635397-27635543)
chr2 (10-156)||(15010671-15010818)
chr2 (14-148)||(6068167-6068301)
[»] chr8 (2 HSPs)
chr8 (10-156)||(29515876-29516022)
chr8 (10-148)||(4168457-4168594)
[»] chr4 (2 HSPs)
chr4 (10-156)||(36183618-36183764)
chr4 (10-156)||(28378693-28378839)
[»] chr7 (1 HSPs)
chr7 (10-156)||(28393948-28394095)
[»] chr3 (2 HSPs)
chr3 (10-156)||(53127735-53127880)
chr3 (32-132)||(41119340-41119442)
[»] chr6 (1 HSPs)
chr6 (10-120)||(26472027-26472139)
[»] chr5 (1 HSPs)
chr5 (10-85)||(5958398-5958473)


Alignment Details
Target: chr2 (Bit Score: 212; Significance: 1e-116; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 10 - 229
Target Start/End: Complemental strand, 2787270 - 2787051
Alignment:
Q  10 agatgaacaataagatcaaatcgcggatccgtcacaagaataagatgctcttgataaggatctagatttggttcatccaagaacctagaagagcaattct 109  Q
    ||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2787270 agatgaacaataagatcgaatcgcagatccgtcacaagaataagatgctcttgataaggatctagatttggttcatccaagaacctagaagagcaattct 2787171  T
Q  110 aactctccctttaatcaaagatttaaaatatcaaattgtattaaccttttagagtacttaacaacattacatagaacccactcagattatgttgtgaagt 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2787170 aactctccctttaatcaaagatttaaaatatcaaattgtattaaccttttagagtacttaacaacattacatagaacccactcagattatgttgtgaagt 2787071  T
Q  210 actcaaatcatgcagtatgt 229  Q
    ||||||||||||||||||||    
T  2787070 actcaaatcatgcagtatgt 2787051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 10 - 156
Target Start/End: Complemental strand, 27737739 - 27737593
Alignment:
Q  10 agatgaacaataagatcaaatcgcggatccgtcacaagaataagatgctcttgataaggatctagatttggttcatccaagaacctagaagagcaattct 109  Q
    |||||||| |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27737739 agatgaacgataagatcgaatcgcggatccgccacaagaataagatgctcttgataaggatctagatttggttcatccaagaacctagaagagcaattct 27737640  T
Q  110 aactctccctttaatcaaagatttaaaatatcaaattgtattaacct 156  Q
    ||||||||||| ||||||||||| |||||||||||||||||||||||    
T  27737639 aactctcccttcaatcaaagattgaaaatatcaaattgtattaacct 27737593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 10 - 156
Target Start/End: Complemental strand, 21798112 - 21797966
Alignment:
Q  10 agatgaacaataagatcaaatcgcggatccgtcacaagaataagatgctcttgataaggatctagatttggttcatccaagaacctagaagagcaattct 109  Q
    |||||||| |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  21798112 agatgaacgataagatcgaatcgcggatccgccacaagaataagatgctcttgataaggatctagaattggttcatccaagaacctagaagagcaattct 21798013  T
Q  110 aactctccctttaatcaaagatttaaaatatcaaattgtattaacct 156  Q
    ||||||||||| ||||||||||| |||||||||||||||||||||||    
T  21798012 aactctcccttcaatcaaagattgaaaatatcaaattgtattaacct 21797966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 10 - 156
Target Start/End: Complemental strand, 21803266 - 21803120
Alignment:
Q  10 agatgaacaataagatcaaatcgcggatccgtcacaagaataagatgctcttgataaggatctagatttggttcatccaagaacctagaagagcaattct 109  Q
    |||||||| |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  21803266 agatgaacgataagatcgaatcgcggatccgccacaagaataagatgctcttgataaggatctagaattggttcatccaagaacctagaagagcaattct 21803167  T
Q  110 aactctccctttaatcaaagatttaaaatatcaaattgtattaacct 156  Q
    ||||||||||| ||||||||||| |||||||||||||||||||||||    
T  21803166 aactctcccttcaatcaaagattgaaaatatcaaattgtattaacct 21803120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 10 - 156
Target Start/End: Original strand, 44801568 - 44801714
Alignment:
Q  10 agatgaacaataagatcaaatcgcggatccgtcacaagaataagatgctcttgataaggatctagatttggttcatccaagaacctagaagagcaattct 109  Q
    |||||||| |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  44801568 agatgaacgataagatcgaatcgcggatccgccacaagaataagatgctcttgataaggatctagaattggttcatccaagaacctagaagagcaattct 44801667  T
Q  110 aactctccctttaatcaaagatttaaaatatcaaattgtattaacct 156  Q
    ||||||||||| ||||||||||| |||||||||||||||||||||||    
T  44801668 aactctcccttcaatcaaagattgaaaatatcaaattgtattaacct 44801714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 10 - 156
Target Start/End: Original strand, 27635397 - 27635543
Alignment:
Q  10 agatgaacaataagatcaaatcgcggatccgtcacaagaataagatgctcttgataaggatctagatttggttcatccaagaacctagaagagcaattct 109  Q
    |||||||| |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  27635397 agatgaacgataagatcgaatcgcggatccgccacaagaataagatgctcttgataaggatctagatttggttcatccaagaacctagaatagcaattct 27635496  T
Q  110 aactctccctttaatcaaagatttaaaatatcaaattgtattaacct 156  Q
    || |||||||| ||||||||||| |||||||||||||||| ||||||    
T  27635497 aaatctcccttcaatcaaagattgaaaatatcaaattgtactaacct 27635543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 10 - 156
Target Start/End: Original strand, 15010671 - 15010818
Alignment:
Q  10 agatgaacaataagatcaaatcgcggatccgtcacaagaataagatgctcttgataaggatctagatttggttcatccaagaacctagaagagcaattct 109  Q
    |||||||| |||||||| ||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15010671 agatgaactataagatcgaatcgcggatccactacaagaataagatgctcttgataaggatctagatttggttcatccaagaacctagaagagcaattct 15010770  T
Q  110 aactctccctttaatcaaagatt-taaaatatcaaattgtattaacct 156  Q
    ||||||||||  |||||||||||  |||||||||||||||||||||||    
T  15010771 aactctccctccaatcaaagattgaaaaatatcaaattgtattaacct 15010818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 14 - 148
Target Start/End: Complemental strand, 6068301 - 6068167
Alignment:
Q  14 gaacaataagatcaaatcgcggatccgtcacaagaataagatgctcttgataaggatctagatttggttcatccaagaacctagaagagcaattctaact 113  Q
    |||| |||||||  ||| || |||||| |||||||||| |||||||||||||| |||||| |||||||||||| || |||||||||||||||| ||||||    
T  6068301 gaacgataagattgaattgcagatccgccacaagaatatgatgctcttgataaagatctaaatttggttcatcaaacaacctagaagagcaatactaact 6068202  T
Q  114 ctcccttt-aatcaaagatttaaaatatcaaattgt 148  Q
    ||| |||| ||||||||| || ||||||||||||||    
T  6068201 ctcgctttcaatcaaaga-ttgaaatatcaaattgt 6068167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 123; Significance: 3e-63; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 10 - 156
Target Start/End: Original strand, 29515876 - 29516022
Alignment:
Q  10 agatgaacaataagatcaaatcgcggatccgtcacaagaataagatgctcttgataaggatctagatttggttcatccaagaacctagaagagcaattct 109  Q
    |||||||| |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  29515876 agatgaacgataagatcgaatcgcggatccgccacaagaataagatgctcttgataaggatctagaattggttcatccaagaacctagaagagcaattct 29515975  T
Q  110 aactctccctttaatcaaagatttaaaatatcaaattgtattaacct 156  Q
    ||||||||||| ||||||||||| |||||||||||||||||||||||    
T  29515976 aactctcccttcaatcaaagattgaaaatatcaaattgtattaacct 29516022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 10 - 148
Target Start/End: Complemental strand, 4168594 - 4168457
Alignment:
Q  10 agatgaacaataagatcaaatcgcggatccgtcacaagaataagatgctcttgataaggatctagatttggttcatccaagaacctagaagagcaattct 109  Q
    ||||| || |||||||| |||| |||||  | ||||||||||| |||||||||||||||| ||||||||||||||||||| ||||||||| |||||||||    
T  4168594 agatgtacgataagatcgaatcacggattagccacaagaataaaatgctcttgataaggagctagatttggttcatccaataacctagaatagcaattct 4168495  T
Q  110 aactctccctttaatcaaagatttaaaatatcaaattgt 148  Q
    |||| |  ||| ||||||||| || ||||||||||||||    
T  4168494 aactttttcttcaatcaaaga-ttgaaatatcaaattgt 4168457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 115; Significance: 2e-58; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 10 - 156
Target Start/End: Complemental strand, 36183764 - 36183618
Alignment:
Q  10 agatgaacaataagatcaaatcgcggatccgtcacaagaataagatgctcttgataaggatctagatttggttcatccaagaacctagaagagcaattct 109  Q
    |||||||| |||||||| |||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  36183764 agatgaacgataagatcgaatcgtagatccgtcacaagaataagatgctcttgataaggatctagatttggttcatccaagaacctagaatagcaattct 36183665  T
Q  110 aactctccctttaatcaaagatttaaaatatcaaattgtattaacct 156  Q
    ||||||||||| ||||||||||| |||||||||||||||| ||||||    
T  36183664 aactctcccttcaatcaaagattgaaaatatcaaattgtactaacct 36183618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 10 - 156
Target Start/End: Original strand, 28378693 - 28378839
Alignment:
Q  10 agatgaacaataagatcaaatcgcggatccgtcacaagaataagatgctcttgataaggatctagatttggttcatccaagaacctagaagagcaattct 109  Q
    |||||||| |||||||| |||| ||||||||  ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  28378693 agatgaacgataagatcgaatcacggatccgcaacaagaataagatgctcttgaaaaggatctagatttggttcatccaagaacctagaagagcaattct 28378792  T
Q  110 aactctccctttaatcaaagatttaaaatatcaaattgtattaacct 156  Q
    |||| |||||| ||||||||||| |||||||||||||||||||||||    
T  28378793 aactatcccttcaatcaaagattgaaaatatcaaattgtattaacct 28378839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 108; Significance: 2e-54; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 10 - 156
Target Start/End: Original strand, 28393948 - 28394095
Alignment:
Q  10 agatgaacaataagatcaaatcgcggatccgtcacaagaataagatgctcttgataaggatctagatttggttcatccaagaacctagaagagcaattct 109  Q
    |||||||  |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |    
T  28393948 agatgaatgataagatcgaatcgcggatccgccacaagaataagatgctcttgataaggatctaggtttggttcatccaagaacctagaagagcaatttt 28394047  T
Q  110 aactctccctttaatcaaagatt-taaaatatcaaattgtattaacct 156  Q
    ||||||||||| |||||||||||  |||||||||||||||||||||||    
T  28394048 aactctcccttcaatcaaagattgaaaaatatcaaattgtattaacct 28394095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 99; Significance: 5e-49; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 10 - 156
Target Start/End: Complemental strand, 53127880 - 53127735
Alignment:
Q  10 agatgaacaataagatcaaatcgcggatccgtcacaagaataagatgctcttgataaggatctagatttggttcatccaagaacctagaagagcaattct 109  Q
    |||||||| |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| | ||||||||| |||||||||||||||||||    
T  53127880 agatgaacgataagatcgaatcgcggatccgccacaagaataagatgctcttgataaggatctagattcgattcatccaacaacctagaagagcaattct 53127781  T
Q  110 aactctccctttaatcaaagatttaaaatatcaaattgtattaacct 156  Q
    |||||||  || ||||||||| || ||||||||||||||||||||||    
T  53127780 aactctctgttcaatcaaaga-ttgaaatatcaaattgtattaacct 53127735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 32 - 132
Target Start/End: Complemental strand, 41119442 - 41119340
Alignment:
Q  32 gcggatccgtcacaagaataag-atgctcttgataaggatctagatttggttcatcc-aagaacctagaagagcaattctaactctccctttaatcaaag 129  Q
    ||||||||| |||||||||| | ||| ||| |||||||||||||| ||||||||||| || |||||||| ||||||  ||| ||||| ||| |||| |||    
T  41119442 gcggatccgccacaagaatacggatgttctagataaggatctagaattggttcatccaaataacctagaggagcaaaactagctctcacttcaatcgaag 41119343  T
Q  130 att 132  Q
    |||    
T  41119342 att 41119340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 10 - 120
Target Start/End: Complemental strand, 26472139 - 26472027
Alignment:
Q  10 agatgaacaataagatcaaatcgcggatccgtcacaagaata--agatgctcttgataaggatctagatttggttcatccaagaacctagaagagcaatt 107  Q
    ||||||||||||||||| |||||  |||||| ||||||||||  |||||||||||||| |||| ||||||||||||||||||||| |||| |||||||||    
T  26472139 agatgaacaataagatcgaatcgtagatccgccacaagaatataagatgctcttgatacggatttagatttggttcatccaagaatctagtagagcaatt 26472040  T
Q  108 ctaactctccctt 120  Q
    | |||||| ||||    
T  26472039 ccaactctacctt 26472027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 10 - 85
Target Start/End: Complemental strand, 5958473 - 5958398
Alignment:
Q  10 agatgaacaataagatcaaatcgcggatccgtcacaagaataagatgctcttgataaggatctagatttggttcat 85  Q
    |||||||| ||||||||||||| |||| ||||||||| ||||||||| |||| |||||||| ||||||||||||||    
T  5958473 agatgaacgataagatcaaatcacggacccgtcacaaaaataagatgttctttataaggatttagatttggttcat 5958398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University