View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15294_high_5 (Length: 382)
Name: NF15294_high_5
Description: NF15294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15294_high_5 |
 | |
|
| [»] scaffold0295 (1 HSPs) |
| | |
|
| [»] scaffold0807 (1 HSPs) |
| | |
|
| [»] scaffold0041 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 352; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 1 - 364
Target Start/End: Complemental strand, 51113873 - 51113510
Alignment:
| Q |
1 |
acaactcttcgagatcacatagagtgtttcatcatcaaccattgtatttgacaagtctaacacctccagttttggagcttcaaagttcattccaagtagc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
51113873 |
acaactcttcgagatcacatagagtgtttcatcatcaaccattgtatttgacaagtctaacacctccagtttgggagcttcaaagttcattccaagtagc |
51113774 |
T |
|
| Q |
101 |
ttcagttttgaacagtaagctaatttcaaatgcctaattttacaacatctctttaaaacttgacaaataccttcggatatctcatagcaatgagttaaat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51113773 |
ttcagttttgaacagtaagctaatttcaaatgcctaattttacaacatctctttaaaacttgacaaataccttcggatatctcatagcaatgagttaaat |
51113674 |
T |
|
| Q |
201 |
caagaagctgcagattggggaaaatggaagcaatcattatgatgctctcctctcttaaccatggattgtgatccaactggagagactttaattgcggtct |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51113673 |
caagaagctgcagattggggaaaatggaagcaatcattatgatgctctcatctcttaaccatggattgtgatccaactggagagactttaattgcggtct |
51113574 |
T |
|
| Q |
301 |
tacaacaaaacccatcaaagaattagaattctctacaatcattctaacaatacctgtgccggtt |
364 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
51113573 |
tacaacaaaacccatcaaagaattagaattctctacaatcattctaacaatacctgtgctggtt |
51113510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 337
Target Start/End: Complemental strand, 51764532 - 51764196
Alignment:
| Q |
1 |
acaactcttcgagatcacatagagtgtttcatcatcaaccattgtatttgacaagtctaacacctccagttttggagcttcaaagttcattccaagtagc |
100 |
Q |
| |
|
|||| |||| |||||| |||||||||||| ||||||||| ||||| ||||||||||||||||||||| || ||| || |||||||||||||||||||| |
|
|
| T |
51764532 |
acaattctttgagatcgcatagagtgttttatcatcaacttttgtaaatgacaagtctaacacctccagcttcggaactgcaaagttcattccaagtagc |
51764433 |
T |
|
| Q |
101 |
ttcagttttgaacagtaagctaatttcaaatgcctaattttacaacatctctttaaaacttgacaaataccttcggatatctcatagcaatgagttaaat |
200 |
Q |
| |
|
|||| | ||||||| | | || |||||||||||||| ||| |||||||| ||||||||| ||| | ||||| ||||| || |||| | | |||| |
|
|
| T |
51764432 |
ttcactcttgaacattcggataggttcaaatgcctaatcttagaacatctccttaaaacttcacagacacctttagatatgcgattgcaagaattaaaat |
51764333 |
T |
|
| Q |
201 |
caagaagctgcagattggggaaaatggaagcaatcattatgatgctctcctctcttaaccatggattgtgatccaactggagagactttaattgcggtct |
300 |
Q |
| |
|
|||| ||||||| |||||||||||||||||||| |||||||||||| || || |||||||||| ||| | | ||| | ||||||||||||||| || |
|
|
| T |
51764332 |
caagcagctgcaaattggggaaaatggaagcaaacattatgatgctttcatcacttaaccatgtattttcacccagatagagagactttaattgagggta |
51764233 |
T |
|
| Q |
301 |
tacaacaaaacccatcaaagaattagaattctctaca |
337 |
Q |
| |
|
|||| |||| ||| |||||||| ||||||||||||| |
|
|
| T |
51764232 |
tacaccaaagtccaccaaagaatcagaattctctaca |
51764196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 1 - 294
Target Start/End: Complemental strand, 13470824 - 13470531
Alignment:
| Q |
1 |
acaactcttcgagatcacatagagtgtttcatcatcaaccattgtatttgacaagtctaacacctccagttttggagcttcaaagttcattccaagtagc |
100 |
Q |
| |
|
|||| |||| ||||||| ||||||||||| ||||| |||| ||||||||||||||| ||||||||||| || ||| | |||||||||||||||||||| |
|
|
| T |
13470824 |
acaattctttgagatcatatagagtgttttatcattaacctttgtatttgacaagttcaacacctccagattgggaacaacaaagttcattccaagtagc |
13470725 |
T |
|
| Q |
101 |
ttcagttttgaacagtaagctaatttcaaatgcctaattttacaacatctctttaaaacttgacaaataccttcggatatctcatagcaatgagttaaat |
200 |
Q |
| |
|
|||| |||| ||| || ||||| |||||||||||||| ||||||||| || ||||||||||||||||||||| |||| || |||| | | |||| |
|
|
| T |
13470724 |
ttcacttttttacaataggctaagttcaaatgcctaatcttacaacatatccttaaaacttgacaaataccttttgataagagattgcaacaattcaaat |
13470625 |
T |
|
| Q |
201 |
caagaagctgcagattggggaaaatggaagcaatcattatgatgctctcctctcttaaccatggattgtgatccaactggagagactttaattg |
294 |
Q |
| |
|
|||| ||||||| |||||||||| ||||||||| ||||||||||| || || ||||||||| |||| | |||| | ||||||||||||||| |
|
|
| T |
13470624 |
caagcagctgcaaattggggaaattggaagcaaacattatgatgccttcatcacttaaccattgattttttcccaaatagagagactttaattg |
13470531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 119 - 337
Target Start/End: Complemental strand, 514702 - 514481
Alignment:
| Q |
119 |
gctaatttcaaatgcctaattttacaacatctctttaaaacttgacaaatacct---tcggatatctcatagcaatgagttaaatcaagaagctgcagat |
215 |
Q |
| |
|
||||| |||||||||||||| ||| | |||||||||||||||||||| |||| | || ||||| | || |||| | ||||||| ||||||| || |
|
|
| T |
514702 |
gctaagttcaaatgcctaatcttagaccatctctttaaaacttgacagatacttttgtcagatatgttatcacaatagctcaaatcaattagctgcaaat |
514603 |
T |
|
| Q |
216 |
tggggaaaatggaagcaatcattatgatgctctcctctcttaaccatggattgtgatccaactggagagactttaattgcggtcttacaacaaaacccat |
315 |
Q |
| |
|
| |||||||| ||||||| |||||| | | | || |||||||| |||| ||||||| |||| | |||||| |||||||| || | |||||||| ||| |
|
|
| T |
514602 |
tcgggaaaattgaagcaaacattataaggttttcatctcttaagcatgaattgtgagccaaatagagagattttaattgagggttcacaacaaagtccaa |
514503 |
T |
|
| Q |
316 |
caaagaattagaattctctaca |
337 |
Q |
| |
|
||||||||| || ||||||||| |
|
|
| T |
514502 |
caaagaattggagttctctaca |
514481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 51120985 - 51120892
Alignment:
| Q |
1 |
acaactcttcgagatcacatagagtgtttcatcatcaaccattgtatttgacaagtctaacacctccagttttggagcttcaaagttcattcca |
94 |
Q |
| |
|
||||||||| ||||| ||||| ||| ||||||||||||| |||||| ||||||| |||||||||| ||| || ||||||||||||||||| |
|
|
| T |
51120985 |
acaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagttcattcca |
51120892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 174
Target Start/End: Original strand, 1657306 - 1657427
Alignment:
| Q |
49 |
tgacaagtctaacacctccagttttggagcttcaaagttcattccaagtagcttcagttttgaacagtaagctaatttcaaatgcctaattttacaacat |
148 |
Q |
| |
|
||||||||| |||||||||||||| ||| |||||||||||| | | ||||||||||| || || || ||| |||||||| ||||| ||||||||| |
|
|
| T |
1657306 |
tgacaagtccaacacctccagtttgggaacttcaaagttcaatgtacgtagcttcagtctt----agcgagttaaattcaaatgtctaatgttacaacat |
1657401 |
T |
|
| Q |
149 |
ctctttaaaacttgacaaataccttc |
174 |
Q |
| |
|
|| ||||||| ||| ||||||||| |
|
|
| T |
1657402 |
atcattaaaacatgaacaataccttc |
1657427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 105; Significance: 2e-52; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 6 - 337
Target Start/End: Complemental strand, 19468586 - 19468255
Alignment:
| Q |
6 |
tcttcgagatcacatagagtgtttcatcatcaaccattgtatttgacaagtctaacacctccagttttggagcttcaaagttcattccaagtagcttcag |
105 |
Q |
| |
|
|||| ||||||||||| |||||||||||||||||| |||||| |||||| | ||||||||||| || ||| || ||||||||| ||||||||| |||| |
|
|
| T |
19468586 |
tctttgagatcacataaagtgtttcatcatcaacctttgtatctgacaacttcaacacctccagcttgggaactacaaagttcactccaagtagattcac |
19468487 |
T |
|
| Q |
106 |
ttttgaacagtaagctaatttcaaatgcctaattttacaacatctctttaaaacttgacaaataccttcggatatctcatagcaatgagtt-aaatcaag |
204 |
Q |
| |
|
| ||||||||| ||||| || ||||||||||| ||| |||| ||| |||||||||||||||| ||||| ||||| | | || ||||||| |||||||| |
|
|
| T |
19468486 |
tcttgaacagtgggctaagtttaaatgcctaatattagaacacctccttaaaacttgacaaatgccttccgatatgtggttgc-atgagttcaaatcaag |
19468388 |
T |
|
| Q |
205 |
aagctgcagattggggaaaatggaagcaatcattatgatgctctcctctcttaaccatggattgtgatccaactggagagactttaattgcggtcttaca |
304 |
Q |
| |
|
||||||| |||||| ||||||||||||| |||||||||| | || || |||||||||| ||| | | |||| | |||| |||||||||| || |||| |
|
|
| T |
19468387 |
cagctgcaaattgggaaaaatggaagcaaacattatgatgttttcatcgcttaaccatgaattctcagccaagtagagatactttaattgagggaataca |
19468288 |
T |
|
| Q |
305 |
acaaaacccatcaaagaattagaattctctaca |
337 |
Q |
| |
|
||||| || |||||||| ||||||||||||| |
|
|
| T |
19468287 |
ccaaaatccggcaaagaatcagaattctctaca |
19468255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 125 - 345
Target Start/End: Original strand, 9581199 - 9581422
Alignment:
| Q |
125 |
ttcaaatgcctaattttacaacatctctttaaaacttgacaaatacct---tcggatatctcatagcaatgagttaaatcaagaagctgcagattgggga |
221 |
Q |
| |
|
|||||||| ||||| | ||||||||| ||||||||||||||||||||| | ||||| | | ||||||| | |||||| ||||||| |||||||| |
|
|
| T |
9581199 |
ttcaaatgtctaatctgacaacatctttttaaaacttgacaaatacctcttttagatatgttacagcaatggcgcagatcaagcagctgcaaattgggga |
9581298 |
T |
|
| Q |
222 |
aaatggaagcaatcattatgatgctctcctctcttaaccatggattgtgatccaactggagagactttaattgcggtcttacaacaaaacccatcaaaga |
321 |
Q |
| |
|
|||| ||||||| |||||||||| | | |||||||| ||| |||||||| |||| | |||||||||||||| || |||||| ||| | || | ||||| |
|
|
| T |
9581299 |
aaattgaagcaaacattatgatgtttttatctcttaaacattgattgtgacccaaatcaagagactttaattgagggcttacaccaatatccttgaaaga |
9581398 |
T |
|
| Q |
322 |
attagaattctctacaatcattct |
345 |
Q |
| |
|
||||||||||| ||| ||||||| |
|
|
| T |
9581399 |
cttagaattctcgacactcattct |
9581422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 125 - 335
Target Start/End: Original strand, 9586767 - 9586980
Alignment:
| Q |
125 |
ttcaaatgcctaattttacaacatctctttaaaacttgacaaatacct---tcggatatctcatagcaatgagttaaatcaagaagctgcagattgggga |
221 |
Q |
| |
|
|||||||| ||||| | ||||||||| | ||||||||||||||||||| | ||||| | | ||||||| | |||||| ||||||| |||||||| |
|
|
| T |
9586767 |
ttcaaatgtctaatctgacaacatctttgtaaaacttgacaaatacctcttttagatatgttacagcaatggcacagatcaagcagctgcaaattgggga |
9586866 |
T |
|
| Q |
222 |
aaatggaagcaatcattatgatgctctcctctcttaaccatggattgtgatccaactggagagactttaattgcggtcttacaacaaaacccatcaaaga |
321 |
Q |
| |
|
|||| ||||||| |||||||||| | | |||||||||||| ||||| || |||| | |||||||| ||||| ||||||||||||| | || ||||| | |
|
|
| T |
9586867 |
aaattgaagcaaacattatgatgtttttatctcttaaccattgattgcgacccaaatcaagagacttcaattgaggtcttacaacaatatccttcaaaaa |
9586966 |
T |
|
| Q |
322 |
attagaattctcta |
335 |
Q |
| |
|
||||||||||||| |
|
|
| T |
9586967 |
tttagaattctcta |
9586980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 52082588 - 52082701
Alignment:
| Q |
1 |
acaactcttcgagatcacatagagtgtttcatcatcaaccattgtatttgacaagtctaacacctccagttttggagcttcaaagttcattccaagtagc |
100 |
Q |
| |
|
||||||||| ||||||||||| | |||||||||||||| |||| |||||||||| |||||||||| ||| | | ||| |||||||||| |||||| |
|
|
| T |
52082588 |
acaactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagttcattgaaagtaga |
52082687 |
T |
|
| Q |
101 |
ttcagttttgaaca |
114 |
Q |
| |
|
|||||| ||||||| |
|
|
| T |
52082688 |
ttcagtgttgaaca |
52082701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 333
Target Start/End: Original strand, 7554709 - 7554761
Alignment:
| Q |
281 |
agagactttaattgcggtcttacaacaaaacccatcaaagaattagaattctc |
333 |
Q |
| |
|
||||||||||| | || |||||||||||| |||||||||||| ||||||||| |
|
|
| T |
7554709 |
agagactttaagttggggcttacaacaaaatccatcaaagaataagaattctc |
7554761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 95; Significance: 2e-46; HSPs: 24)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 6394871 - 6395113
Alignment:
| Q |
1 |
acaactcttcgagatcacatagagtgtttcatcatcaaccattgtatttgacaagtctaacacctccagttttggagcttcaaagttcattccaagtagc |
100 |
Q |
| |
|
|||| |||| ||||||||| | || |||||||||||||| ||||||||||||||| ||||||||||| | ||| || |||||||||||||| |||| |
|
|
| T |
6394871 |
acaattctttgagatcacagaaagagtttcatcatcaacgcttgtatttgacaagttcaacacctccagctcgggaactgcaaagttcattccatgtagt |
6394970 |
T |
|
| Q |
101 |
ttcagttttgaacagtaagctaatttcaaatgcctaattttacaacatctctttaaaacttgacaaataccttcggatatctcatagcaatgagttaaat |
200 |
Q |
| |
|
|||| |||||||||| ||||||| |||||||| ||| ||||||||| ||||||||||||||||||||||||| ||||| | ||||| | || |||| |
|
|
| T |
6394971 |
ttcacttttgaacagaaagctaagttcaaatgtttaagcttacaacatttctttaaaacttgacaaataccttcagatatttgtgagcaacgtgtcaaat |
6395070 |
T |
|
| Q |
201 |
caagaagctgcagattggggaaaatggaagcaatcattatgat |
243 |
Q |
| |
|
|||| ||||| | ||||||||||||||||| || ||||||||| |
|
|
| T |
6395071 |
caagtagctgtaaattggggaaaatggaagtaaacattatgat |
6395113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 12 - 291
Target Start/End: Original strand, 6432179 - 6432458
Alignment:
| Q |
12 |
agatcacatagagtgtttcatcatcaaccattgtatttgacaagtctaacacctccagttttggagcttcaaagttcattccaagtagcttcagttttga |
111 |
Q |
| |
|
|||||||||| ||||||||||||||||| ||||||||||||||| ||||||| ||| || ||| ||||||||||||||||| ||||||||| |||| |
|
|
| T |
6432179 |
agatcacataaagtgtttcatcatcaacgcttgtatttgacaagttcaacaccttcagcttgggaacttcaaagttcattccatgtagcttcacttttat |
6432278 |
T |
|
| Q |
112 |
acagtaagctaatttcaaatgcctaattttacaacatctctttaaaacttgacaaataccttcggatatctcatagcaatgagttaaatcaagaagctgc |
211 |
Q |
| |
|
||| || ||||| |||||||| ||| ||||||||||||| |||||||||||||||||||||| ||| || || | ||||||||| | ||| |
|
|
| T |
6432279 |
acaataggctaagttcaaatgtttaagtttacaacatctccttaaaacttgacaaataccttcatttatacgatgacaccaacgcaaatcaagatgttgc |
6432378 |
T |
|
| Q |
212 |
agattggggaaaatggaagcaatcattatgatgctctcctctcttaaccatggattgtgatccaactggagagactttaa |
291 |
Q |
| |
|
| |||||||||||||||||||| ||||||||| || || | |||||||||| ||||||| |||| | |||||||||||| |
|
|
| T |
6432379 |
aaattggggaaaatggaagcaaacattatgatcctttcattccttaaccatgaattgtgacccaaatagagagactttaa |
6432458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 7119164 - 7119394
Alignment:
| Q |
1 |
acaactcttcgagatcacatagagtgtttcatcatcaaccattgtatttgacaagtctaacacctccagttttggagcttcaaagttcattccaagtagc |
100 |
Q |
| |
|
|||| ||||||||||||||| ||||||||||||||||||| | |||| |||||||| ||||||||||| | || | |||||||||||||||||||| |
|
|
| T |
7119164 |
acaattcttcgagatcacatggagtgtttcatcatcaaccttcgtatctgacaagttcaacacctccagctggtgaacaacaaagttcattccaagtagc |
7119263 |
T |
|
| Q |
101 |
ttcagttttgaacagtaagctaatttcaaatgcctaattttacaacatctctttaaaacttgacaaataccttcggatatctcatagcaatgagttaaat |
200 |
Q |
| |
|
|||| | ||||||||| ||||| |||||||| |||| ||| |||||||| |||||||||||||||||||||| ||||| | || |||| | | |||| |
|
|
| T |
7119264 |
ttcactcttgaacagtgggctaagttcaaatgtttaatcttagaacatctccttaaaacttgacaaataccttcagatatgttattgcaagtattcaaat |
7119363 |
T |
|
| Q |
201 |
caagaagctgcagattggggaaaatggaagc |
231 |
Q |
| |
|
||||||| || | ||||||||||| |||||| |
|
|
| T |
7119364 |
caagaagttgtaaattggggaaaaaggaagc |
7119394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 7131642 - 7131872
Alignment:
| Q |
1 |
acaactcttcgagatcacatagagtgtttcatcatcaaccattgtatttgacaagtctaacacctccagttttggagcttcaaagttcattccaagtagc |
100 |
Q |
| |
|
|||| ||||||||||||||| ||||||||||||||||||| | |||| |||||||| ||||||||||| | || | |||||||||||||||||||| |
|
|
| T |
7131642 |
acaattcttcgagatcacatggagtgtttcatcatcaaccttcgtatctgacaagttcaacacctccagctggcgaacaacaaagttcattccaagtagc |
7131741 |
T |
|
| Q |
101 |
ttcagttttgaacagtaagctaatttcaaatgcctaattttacaacatctctttaaaacttgacaaataccttcggatatctcatagcaatgagttaaat |
200 |
Q |
| |
|
|||| | ||||||||| ||||| |||||||| |||| ||| |||||||| |||||||||||||||||||||| ||||| | || |||| | | |||| |
|
|
| T |
7131742 |
ttcactcttgaacagtgggctaagttcaaatgtttaatcttagaacatctccttaaaacttgacaaataccttcagatatgttattgcaagtattcaaat |
7131841 |
T |
|
| Q |
201 |
caagaagctgcagattggggaaaatggaagc |
231 |
Q |
| |
|
||||||| || | ||||||||||| |||||| |
|
|
| T |
7131842 |
caagaagttgtaaattggggaaaaaggaagc |
7131872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 1 - 180
Target Start/End: Original strand, 6402867 - 6403046
Alignment:
| Q |
1 |
acaactcttcgagatcacatagagtgtttcatcatcaaccattgtatttgacaagtctaacacctccagttttggagcttcaaagttcattccaagtagc |
100 |
Q |
| |
|
|||| |||| |||||||||||||||||||||||||||||| | |||| |||||||| ||||| || |||| ||| || ||||||| |||||||||||| |
|
|
| T |
6402867 |
acaattctttgagatcacatagagtgtttcatcatcaaccttcgtatctgacaagttcaacacttctagttggggaactgcaaagtttattccaagtagc |
6402966 |
T |
|
| Q |
101 |
ttcagttttgaacagtaagctaatttcaaatgcctaattttacaacatctctttaaaacttgacaaataccttcggatat |
180 |
Q |
| |
|
|||| | ||||||| || ||| |||||||||||||| |||||||||||| |||||||||||||||||||||| ||||| |
|
|
| T |
6402967 |
ttcactcttgaacacccagttaagttcaaatgcctaatgttacaacatctccttaaaacttgacaaataccttcagatat |
6403046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 6415973 - 6416215
Alignment:
| Q |
1 |
acaactcttcgagatcacatagagtgtttcatcatcaaccattgtatttgacaagtctaacacctccagttttggagcttcaaagttcattccaagtagc |
100 |
Q |
| |
|
|||| |||| |||||||||||||| |||| ||||| |||| ||||||||||||||| ||||||||||| || ||| || |||||| ||||||| ||||| |
|
|
| T |
6415973 |
acaattctttgagatcacatagagagttttatcattaacctttgtatttgacaagttcaacacctccaggttgggaactacaaagtccattccatgtagc |
6416072 |
T |
|
| Q |
101 |
ttcagttttgaacagtaagctaatttcaaatgcctaattttacaacatctctttaaaacttgacaaataccttcggatatctcatagcaatgagttaaat |
200 |
Q |
| |
|
|||| |||| ||| | ||||| |||||||||| ||| ||||||||| ||||||||||||||||||||||||| |||| || ||| || | |||| |
|
|
| T |
6416073 |
ttcacttttttacaaaaggctaagttcaaatgcccaatcttacaacatatctttaaaacttgacaaataccttcagataagagattacaacgattcaaat |
6416172 |
T |
|
| Q |
201 |
caagaagctgcagattggggaaaatggaagcaatcattatgat |
243 |
Q |
| |
|
|||| ||||||| ||||||||| |||||| || ||||||||| |
|
|
| T |
6416173 |
caagcagctgcaaattggggaagttggaagaaaacattatgat |
6416215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 1 - 294
Target Start/End: Original strand, 6410013 - 6410306
Alignment:
| Q |
1 |
acaactcttcgagatcacatagagtgtttcatcatcaaccattgtatttgacaagtctaacacctccagttttggagcttcaaagttcattccaagtagc |
100 |
Q |
| |
|
|||| |||| ||||||||||| || |||||||||||||| ||||||||||| ||| ||||||| ||| || ||| ||||||||||||||||| ||||| |
|
|
| T |
6410013 |
acaattctttgagatcacataaagagtttcatcatcaacgcttgtatttgactagttcaacaccttcagcttgggaacttcaaagttcattccatgtagc |
6410112 |
T |
|
| Q |
101 |
ttcagttttgaacagtaagctaatttcaaatgcctaattttacaacatctctttaaaacttgacaaataccttcggatatctcatagcaatgagttaaat |
200 |
Q |
| |
|
|||| |||| || || ||||| | ||||||| ||| ||||||||| ||| ||||||||||||||||||||| ||||| | | |||| || |||| |
|
|
| T |
6410113 |
ttcacttttttgcaataggctaagtccaaatgcttaagcttacaacatttctgtaaaacttgacaaataccttcagatatttgctggcaacccgtcaaat |
6410212 |
T |
|
| Q |
201 |
caagaagctgcagattggggaaaatggaagcaatcattatgatgctctcctctcttaaccatggattgtgatccaactggagagactttaattg |
294 |
Q |
| |
|
|||| || || | |||||| ||||||||||||| || ||||| | || || |||||| ||| ||||| |||||| | ||||||||||||||| |
|
|
| T |
6410213 |
caagtagttgtaaattgggaaaaatggaagcaaacaaaatgattatttcatcacttaacgatgtattgtaatccaaatagagagactttaattg |
6410306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 11 - 294
Target Start/End: Complemental strand, 6589405 - 6589122
Alignment:
| Q |
11 |
gagatcacatagagtgtttcatcatcaaccattgtatttgacaagtctaacacctccagttttggagcttcaaagttcattccaagtagcttcagttttg |
110 |
Q |
| |
|
||||||| ||| ||||||| ||||| ||| ||||||||||||||| ||||||||||| | ||| || |||||||||||||||||||||||| ||| |
|
|
| T |
6589405 |
gagatcagatatagtgttttatcattaacatttgtatttgacaagttcaacacctccagcatgggaactacaaagttcattccaagtagcttcactttct |
6589306 |
T |
|
| Q |
111 |
aacagtaagctaatttcaaatgcctaattttacaacatctctttaaaacttgacaaataccttcggatatctcatagcaatgagttaaatcaagaagctg |
210 |
Q |
| |
|
|||| | ||||| |||||||||||||| ||||||||||| | || |||||||||||||||| ||||| | || ||| | | |||||||| | || |
|
|
| T |
6589305 |
tacagaaggctaagttcaaatgcctaatcttacaacatcttctcaatacttgacaaatacctttagatatgttattacaagaattgaaatcaagcacctc |
6589206 |
T |
|
| Q |
211 |
cagattggggaaaatggaagcaatcattatgatgctctcctctcttaaccatggattgtgatccaactggagagactttaattg |
294 |
Q |
| |
|
| |||||||||||||||||||| ||||||||| | | || |||||||||| ||| | | |||| | ||||||||||||||| |
|
|
| T |
6589205 |
taaattggggaaaatggaagcaaacattatgatatttgcatcacttaaccatgaatttttacccaaatagagagactttaattg |
6589122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 6585329 - 6585150
Alignment:
| Q |
1 |
acaactcttcgagatcacatagagtgtttcatcatcaaccattgtatttgacaagtctaacacctccagttttggagcttcaaagttcattccaagtagc |
100 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||| |||||| |||||||| || ||||||| | | | || |||||| |||||||||||| |
|
|
| T |
6585329 |
acaactctttgagatcacatagagtgtttcatcatcaacctttgtatctgacaagttcaatacctccaactgggtaactaaaaagtttattccaagtagc |
6585230 |
T |
|
| Q |
101 |
ttcagttttgaacagtaagctaatttcaaatgcctaattttacaacatctctttaaaacttgacaaataccttcggatat |
180 |
Q |
| |
|
|||| | ||||||| || || |||||||||||||| ||| |||||||| ||||||| |||||||||||||| ||||| |
|
|
| T |
6585229 |
ttcactcttgaacacccagtaaagttcaaatgcctaatattaaaacatctccttaaaacatgacaaataccttcagatat |
6585150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 6426518 - 6426780
Alignment:
| Q |
1 |
acaactcttcgagatcacatagagtgtttcatcatcaaccattgtatttgacaagtctaacacctccagttttggagcttcaaagttcattccaagtagc |
100 |
Q |
| |
|
|||| |||| |||||| |||| | ||||||||||||| |||| |||||||| | ||||||||||| | ||| || |||||||||||||| |||| |
|
|
| T |
6426518 |
acaattctttgagatcgcataaaaagtttcatcatcaatgcttgtgtttgacaaattcaacacctccagctcgggaactgcaaagttcattccatgtagt |
6426617 |
T |
|
| Q |
101 |
ttcagttttgaacagtaagctaatttcaaatgcctaattttacaacatctctttaaaacttgacaaataccttcggatatctcatagcaatgagttaaat |
200 |
Q |
| |
|
|||| ||||||||| ||||||| |||||||| ||| ||||||||| || ||||||||| |||||||||||| ||||| ||| |||| | |||| |
|
|
| T |
6426618 |
ttcacgtttgaacagaaagctaagttcaaatgtttaagcttacaacatttccttaaaacttcacaaataccttcagatatttcacggcaaaccttcaaat |
6426717 |
T |
|
| Q |
201 |
caagaagctgcagattggggaaaatggaagcaatcattatgatgctctcctctcttaaccatg |
263 |
Q |
| |
|
|||| ||||| | ||||||||||||||||||| |||||||||| | || || |||||||||| |
|
|
| T |
6426718 |
caagtagctgtaaattggggaaaatggaagcatacattatgatgatttcatcacttaaccatg |
6426780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 7994274 - 7994031
Alignment:
| Q |
1 |
acaactcttcgagatcacatagagtgtttcatcatcaaccattgtatttgacaagtctaacacctccagttttggagcttcaaagttcattccaagtagc |
100 |
Q |
| |
|
|||| |||| ||||||||||| |||||||| |||| |||| |||||||||||| || |||||||| || || ||| || ||||||||||||| |||||| |
|
|
| T |
7994274 |
acaattctttgagatcacatatagtgtttcgtcattaacccttgtatttgacatgttcaacacctctagcttcggaactacaaagttcattcctagtagc |
7994175 |
T |
|
| Q |
101 |
ttcagttttgaacagtaagctaatttcaaatgcctaattttacaacatctctttaaaacttgacaaataccttcggatatctcatagcaatgagttaaat |
200 |
Q |
| |
|
|||| | ||| ||| | |||| ||||||||||| || ||||||||| || ||||||| | |||||||||||| ||||| ||| |||| | | |||| |
|
|
| T |
7994174 |
ttcactcttgtacaatcggctatgttcaaatgcctgatcttacaacatttccttaaaacgtaacaaataccttcagatataccattgcaagaattcaaat |
7994075 |
T |
|
| Q |
201 |
caagaagctgcagattggggaaaatggaagcaatcattatgatg |
244 |
Q |
| |
|
| || | ||||| ||| |||||||||| ||||| || ||||||| |
|
|
| T |
7994074 |
cgagcatctgcaaatttgggaaaatggtagcaaacaatatgatg |
7994031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 174
Target Start/End: Complemental strand, 11936367 - 11936194
Alignment:
| Q |
1 |
acaactcttcgagatcacatagagtgtttcatcatcaaccattgtatttgacaagtctaacacctccagttttggagcttcaaagttcattccaagtagc |
100 |
Q |
| |
|
||||||||| |||||| |||||||| || ||| ||||| ||||| ||||||||| |||||||||||||| ||| |||||||||||| | | ||||| |
|
|
| T |
11936367 |
acaactctttgagatccaatagagtgatttatcgtcaactcttgtaaatgacaagtccaacacctccagtttgggaacttcaaagttcaatgtacgtagc |
11936268 |
T |
|
| Q |
101 |
ttcagttttgaacagtaagctaatttcaaatgcctaattttacaacatctctttaaaacttgacaaataccttc |
174 |
Q |
| |
|
|||||| |||||||| || ||| |||||||| ||||| ||||||||| || ||||||| ||| ||||||||| |
|
|
| T |
11936267 |
ttcagtcttgaacagcgagttaaattcaaatgtctaatgttacaacatatcattaaaacatgaacaataccttc |
11936194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 174
Target Start/End: Complemental strand, 11948347 - 11948174
Alignment:
| Q |
1 |
acaactcttcgagatcacatagagtgtttcatcatcaaccattgtatttgacaagtctaacacctccagttttggagcttcaaagttcattccaagtagc |
100 |
Q |
| |
|
||||||||| |||||| |||||||| || ||| ||||| ||||| ||||||||| |||||||||||||| ||| |||||||||||| | | ||||| |
|
|
| T |
11948347 |
acaactctttgagatccaatagagtgatttatcgtcaactcttgtaaatgacaagtccaacacctccagtttgggaacttcaaagttcaatgtacgtagc |
11948248 |
T |
|
| Q |
101 |
ttcagttttgaacagtaagctaatttcaaatgcctaattttacaacatctctttaaaacttgacaaataccttc |
174 |
Q |
| |
|
|||||| |||||||| || ||| |||||||| ||||| ||||||||| || ||||||| ||| ||||||||| |
|
|
| T |
11948247 |
ttcagtcttgaacagcgagttaaattcaaatgtctaatgttacaacatatcattaaaacatgaacaataccttc |
11948174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 6594698 - 6594519
Alignment:
| Q |
1 |
acaactcttcgagatcacatagagtgtttcatcatcaaccattgtatttgacaagtctaacacctccagttttggagcttcaaagttcattccaagtagc |
100 |
Q |
| |
|
|||| |||| ||||||||| ||||| |||||||||||| |||||||||||||| |||||||||||||| ||| || |||||| |||||| ||||| |
|
|
| T |
6594698 |
acaattctttgagatcacacgtagtgtctcatcatcaacctctgtatttgacaagtacaacacctccagtttgggaactaaaaagtttattccatgtagc |
6594599 |
T |
|
| Q |
101 |
ttcagttttgaacagtaagctaatttcaaatgcctaattttacaacatctctttaaaacttgacaaataccttcggatat |
180 |
Q |
| |
|
|||| | ||||||| | ||| | |||||| |||| ||| |||||||| |||||||||||||||||||||| ||||| |
|
|
| T |
6594598 |
ttcactcttgaacacccggataagtacaaatgtgtaatcttataacatctccttaaaacttgacaaataccttcagatat |
6594519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 20 - 174
Target Start/End: Complemental strand, 6597001 - 6596847
Alignment:
| Q |
20 |
tagagtgtttcatcatcaaccattgtatttgacaagtctaacacctccagttttggagcttcaaagttcattccaagtagcttcagttttgaacagtaag |
119 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||||||| ||||||||||| | ||| ||||||||| ||| ||||| |||||| ||||||| | | |
|
|
| T |
6597001 |
tagagtgtttcatcatcaacatttgtacttgacaagttcaacacctccagctggggaatttcaaagtttatttcaagtcgcttcacacttgaacattcgg |
6596902 |
T |
|
| Q |
120 |
ctaatttcaaatgcctaattttacaacatctctttaaaacttgacaaataccttc |
174 |
Q |
| |
|
|| | ||||||||| |||| ||| ||||||| | |||||||||||||||||||| |
|
|
| T |
6596901 |
ctcagttcaaatgcttaatcttatcacatctcctgaaaacttgacaaataccttc |
6596847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 294
Target Start/End: Original strand, 6423224 - 6423517
Alignment:
| Q |
1 |
acaactcttcgagatcacatagagtgtttcatcatcaaccattgtatttgacaagtctaacacctccagttttggagcttcaaagttcattccaagtagc |
100 |
Q |
| |
|
||||||||| |||||| |||||||||||| ||| ||| ||||||||||||||| ||||||||||| || ||| ||| |||||||||| || ||||| |
|
|
| T |
6423224 |
acaactctttgagatcgcatagagtgttttatcgctaactcttgtatttgacaagttcaacacctccagcttgggaacttaaaagttcattgcacgtagc |
6423323 |
T |
|
| Q |
101 |
ttcagttttgaacagtaagctaatttcaaatgcctaattttacaacatctctttaaaacttgacaaataccttcggatatctcatagcaatgagttaaat |
200 |
Q |
| |
|
|||| || | ||| || ||||| |||||||| ||| | || |||| || |||||| ||||||||||| || |||| | || |||| | |||| |
|
|
| T |
6423324 |
ttcacttgttcacaataggctaagttcaaatgtttaagctcacgacatttccgtaaaacatgacaaataccatcaaatatttgatggcaacccttcaaat |
6423423 |
T |
|
| Q |
201 |
caagaagctgcagattggggaaaatggaagcaatcattatgatgctctcctctcttaaccatggattgtgatccaactggagagactttaattg |
294 |
Q |
| |
|
|||| || | | ||| |||||||||||||||| |||||||||| | || || |||||||| | | ||| | |||| | ||||||||||||||| |
|
|
| T |
6423424 |
caagtagttttaaattagggaaaatggaagcaaacattatgatgatttcatcacttaaccacgaagtgtaacccaaatagagagactttaattg |
6423517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 180
Target Start/End: Original strand, 14820700 - 14820879
Alignment:
| Q |
1 |
acaactcttcgagatcacatagagtgtttcatcatcaaccattgtatttgacaagtctaacacctccagttttggagcttcaaagttcattccaagtagc |
100 |
Q |
| |
|
|||| |||| ||||||| ||| |||||||||| ||||||| |||||||||| |||| |||||||| | || ||| || ||||||| |||||| |||| |
|
|
| T |
14820700 |
acaattcttggagatcatataaagtgtttcattatcaacctttgtatttgataagttcaacacctctaacttgggaactgcaaagttaattccatgtagt |
14820799 |
T |
|
| Q |
101 |
ttcagttttgaacagtaagctaatttcaaatgcctaattttacaacatctctttaaaacttgacaaataccttcggatat |
180 |
Q |
| |
|
|||| | |||||| | |||| |||||||| ||| ||||||||| || ||||| |||||||||||||||| ||||| |
|
|
| T |
14820800 |
ttcactcctgaacaaaattctaagttcaaatgtttaagcttacaacatttccttaaaccttgacaaataccttcagatat |
14820879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 14802343 - 14802439
Alignment:
| Q |
1 |
acaactcttcgagatcacatagagtgtttcatcatcaaccattgtatttgacaagtctaacacctccagttttggagcttcaaagttcattccaagt |
97 |
Q |
| |
|
|||| |||| || ||||||||||||||||||||||||||| ||||||||||||| | ||||| |||| || ||| |||||||||| |||||||| |
|
|
| T |
14802343 |
acaattctttgaaatcacatagagtgtttcatcatcaacctttgtatttgacaaattcaacacttccatcttgggaacttcaaagttagttccaagt |
14802439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 10579828 - 10579589
Alignment:
| Q |
1 |
acaactcttcgagatcacatagagtgtttcatcatcaaccattgtatttgacaagtctaacacctccagttttggagcttcaaagttcattccaagtagc |
100 |
Q |
| |
|
|||| |||| |||||| ||||||||||| ||||||||| |||||| |||||||| ||||||||||| | ||| | ||| || |||| |||| || |
|
|
| T |
10579828 |
acaattctttgagatcgaatagagtgttttatcatcaacttttgtatatgacaagttcaacacctccagctggggaattacaatctttattctaagtcgc |
10579729 |
T |
|
| Q |
101 |
ttcagttttgaacagtaagctaatttcaaatgcctaattttacaacatctctttaaaacttgacaaataccttcggatatctcatagcaatgagttaaat |
200 |
Q |
| |
|
|||| | ||| ||| | ||||| ||||||||| |||| |||| |||||| | |||||||| |||||||||| ||||| | | |||| | | |||| |
|
|
| T |
10579728 |
ttcactcttggacatttggctaagttcaaatgcttaatcttaccacatcttcctgaaacttgaaaaataccttcagatatgtattcgcaagtattcaaat |
10579629 |
T |
|
| Q |
201 |
caagaagctgcagattggggaaaatggaagcaatcattat |
240 |
Q |
| |
|
|||| ||||||| ||||||||||| |||||| | |||||| |
|
|
| T |
10579628 |
caagcagctgcaaattggggaaaaaggaagctaacattat |
10579589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #20
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 197 - 335
Target Start/End: Original strand, 9411558 - 9411693
Alignment:
| Q |
197 |
aaatcaagaagctgcagattggggaaaatggaagcaatcattatgatgctctcctctcttaaccatggattgtgatccaactggagagactttaattgcg |
296 |
Q |
| |
|
|||||||| ||||||| |||||||||||||||||||| | || ||||| | | ||||||||||| |||| || |||| |||||||| ||||| | |
|
|
| T |
9411558 |
aaatcaagcagctgcaaattggggaaaatggaagcaaaccttttgatgtttttatctcttaacca---attgcgaaccaaacctagagacttcaattggg |
9411654 |
T |
|
| Q |
297 |
gtcttacaacaaaacccatcaaagaattagaattctcta |
335 |
Q |
| |
|
| |||||| ||||| |||||||||||||||||| |||| |
|
|
| T |
9411655 |
gccttacagcaaaattcatcaaagaattagaattttcta |
9411693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 125 - 244
Target Start/End: Complemental strand, 8913952 - 8913834
Alignment:
| Q |
125 |
ttcaaatgcctaattttacaacatctctttaaaacttgacaaataccttcggatatctcatagcaatgagttaaatcaagaagctgcagattggggaaaa |
224 |
Q |
| |
|
|||||||| |||| ||||||||||| ||||||||||||||||||||| ||||| | || |||| | |||||||||| | |||| ||||| |||| |
|
|
| T |
8913952 |
ttcaaatgtttaatcttacaacatcttcttaaaacttgacaaatacctttagatatataatctcaat-aattaaatcaagcatatgcaaattggaaaaaa |
8913854 |
T |
|
| Q |
225 |
tggaagcaatcattatgatg |
244 |
Q |
| |
|
||||||||| |||||||||| |
|
|
| T |
8913853 |
tggaagcaaacattatgatg |
8913834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 29 - 169
Target Start/End: Original strand, 19632474 - 19632611
Alignment:
| Q |
29 |
tcatcatcaaccattgtatttgacaagtctaacacctccagttttggagcttcaaagttcattccaagtagcttcagttttgaacagtaagctaatttca |
128 |
Q |
| |
|
|||||||||||| |||||| |||||||| |||||||| || || ||| || |||||| ||||||||||| || | | ||||||| || ||| |||| |
|
|
| T |
19632474 |
tcatcatcaacctttgtatacgacaagtccaacacctctagcttgggaactagaaagtttattccaagtaggttaactattgaacatcgagttaagttca |
19632573 |
T |
|
| Q |
129 |
aatgcctaattttacaacatctctttaaaacttgacaaata |
169 |
Q |
| |
|
||||| | || |||||||||| ||||||||||||||||| |
|
|
| T |
19632574 |
aatgcgttatcttacaacatc---ttaaaacttgacaaata |
19632611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 6603294 - 6603230
Alignment:
| Q |
1 |
acaactcttcgagatcacatagagtgtttcatcatcaaccattgtatttgacaagtctaacacct |
65 |
Q |
| |
|
||||||||| |||||| |||||| ||||||||||||||| ||||| || |||||| ||||||| |
|
|
| T |
6603294 |
acaactctttgagatcgcatagactgtttcatcatcaacacctgtatctgccaagtccaacacct |
6603230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 2 - 94
Target Start/End: Original strand, 12102274 - 12102366
Alignment:
| Q |
2 |
caactcttcgagatcacatagagtgtttcatcatcaaccattgtatttgacaagtctaacacctccagttttggagcttcaaagttcattcca |
94 |
Q |
| |
|
|||||||| || |||| ||||||| ||| | |||||| ||||| |||||||| |||||||||||||| ||| |||||||||||| |||| |
|
|
| T |
12102274 |
caactctttgaaatcagatagagttcttcgttatcaactcatgtatgtgacaagttcaacacctccagtttgggaacttcaaagttcaatcca |
12102366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 94; Significance: 9e-46; HSPs: 29)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 1 - 337
Target Start/End: Original strand, 546920 - 547259
Alignment:
| Q |
1 |
acaactcttcgagatcacatagagtgtttcatcatcaaccattgtatttgacaagtctaacacctccagttttggagcttcaaagttcattccaagtagc |
100 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||| || |||||| |||||||| | |||||||| ||| ||| |||||||||||||||||| ||| |
|
|
| T |
546920 |
acaactctttgagatcacatagagtgtttcatcattgacaattgtacgtgacaagttcaccacctccaatttaggaacttcaaagttcattccaaatagg |
547019 |
T |
|
| Q |
101 |
ttcagttttgaacagtaagctaatttcaaatgcctaattttacaacatctctttaaaacttgacaaatac---cttcggatatctcatagcaatgagtta |
197 |
Q |
| |
|
|||| | | |||| | | ||| ||||||||||| || |||||||||||| ||||||| | |||||||| |||| ||||| | | |||| | ||| |
|
|
| T |
547020 |
ttcactactaaacaattggataagttcaaatgccttatcttacaacatctccttaaaacatcacaaatactgtcttcagatatgttacgacaataactta |
547119 |
T |
|
| Q |
198 |
aatcaagaagctgcagattggggaaaatggaagcaatcattatgatgctctcctctcttaaccatggattgtgatccaactggagagactttaattgcgg |
297 |
Q |
| |
|
||||||| || |||| ||||||||| ||||||| || |||| ||||||| || ||||||| |||| ||| | | |||| ||||||||||| ||||| || |
|
|
| T |
547120 |
aatcaagcagttgcaaattggggaacatggaaggaaacattttgatgctttcatctcttatgcatgaatttttagccaaatggagagacttcaattgagg |
547219 |
T |
|
| Q |
298 |
tcttacaacaaaacccatcaaagaattagaattctctaca |
337 |
Q |
| |
|
|||||||||||| || | ||||||||||||||||||||| |
|
|
| T |
547220 |
gcttacaacaaaatccttgaaagaattagaattctctaca |
547259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 1 - 268
Target Start/End: Original strand, 570358 - 570622
Alignment:
| Q |
1 |
acaactcttcgagatcacatagagtgtttcatcatcaaccattgtatttgacaagtctaacacctccagttttggagcttcaaagttcattccaagtagc |
100 |
Q |
| |
|
||||||||| || |||| ||||||| ||| | |||||| ||||| |||||||| |||||||| ||||| || |||||||||||| |||| | || |
|
|
| T |
570358 |
acaactctttgaaatcagatagagttcttcgttatcaactcctgtatatgacaagttcaacacctcgagtttgagaacttcaaagttcaatccacgcagt |
570457 |
T |
|
| Q |
101 |
ttcagttttgaacagtaagctaatttcaaatgcctaattttacaacatctctttaaaacttgacaaataccttcggatatctcatagcaatgagttaaat |
200 |
Q |
| |
|
|||| |||||| |||| |||||| ||||||||||||| ||||||||||| |||||||||||||||||| |||||||||| || ||||| | |||||| |
|
|
| T |
570458 |
ttcacttttgagcagtgagctaagttcaaatgcctaagtttacaacatc---ttaaaacttgacaaatactatcggatatctgattgcaataacttaaat |
570554 |
T |
|
| Q |
201 |
caagaagctgcagattggggaaaatggaagcaatcattatgatgctctcctctcttaaccatggattg |
268 |
Q |
| |
|
|||| | ||||| |||||||||||| ||||||| ||||| ||| | || || |||||||||| |||| |
|
|
| T |
570555 |
caagtatctgcaaattggggaaaatagaagcaaacattaaaatgttttcatcacttaaccatgtattg |
570622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 333
Target Start/End: Complemental strand, 1548516 - 1548183
Alignment:
| Q |
1 |
acaactcttcgagatcacatagagtgtttcatcatcaaccattgtatttgacaagtctaacacctccagttttggagcttcaaagttcattcc-aagtag |
99 |
Q |
| |
|
||||||||| |||||||||| ||||||||||||||||| |||||| |||||||| |||||||||||||| ||| ||||||||||| ||| |||||| |
|
|
| T |
1548516 |
acaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaaagtag |
1548417 |
T |
|
| Q |
100 |
cttcagttttgaacagtaagctaatttcaaatgcctaattttacaacatctctttaaaacttgacaaataccttcg---gatatctcatagcaatgagtt |
196 |
Q |
| |
|
||||| |||| ||| |||||| ||||| || ||||| |||||||||| ||||||||| ||||||||||||| ||||| || ||||| | | |
|
|
| T |
1548416 |
cttcacttttaaactacgagctaagttcaactgtctaatcttacaacatc---ttaaaacttcacaaataccttcgtctgatatgccactgcaattaatc |
1548320 |
T |
|
| Q |
197 |
aaatcaagaagctgcagattggggaaaatggaagcaatcattatgatgctctcctctcttaaccatggattgtgatccaactggagagactttaattgcg |
296 |
Q |
| |
|
|||||||| || |||| |||||||||||| |||| || ||| ||||| | || |||||||| | || ||||||| ||| ||| ||||||||||| | |
|
|
| T |
1548319 |
aaatcaagcagttgcaaattggggaaaatcgaagaaaatattttgatggtttcatctcttaagcgtgaattgtgagtcaaacagagtgactttaattgag |
1548220 |
T |
|
| Q |
297 |
gtcttacaacaaaacccatcaaagaattagaattctc |
333 |
Q |
| |
|
|||||||||||| |||| |||||||||||| |||| |
|
|
| T |
1548219 |
gtcttacaacaaggtccatgaaagaattagaagtctc |
1548183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 19 - 174
Target Start/End: Original strand, 1600444 - 1600599
Alignment:
| Q |
19 |
atagagtgtttcatcatcaaccattgtatttgacaagtctaacacctccagttttggagcttcaaagttcattccaagtagcttcagttttgaacagtaa |
118 |
Q |
| |
|
|||||||| |||||| |||||| |||||| |||||||| |||||||||||||| || |||||||||||||||| | ||||||| | ||||||| | |
|
|
| T |
1600444 |
atagagtgcttcatcgtcaacccttgtatatgacaagttcaacacctccagtttaagaacttcaaagttcattcctcgcagcttcattattgaacactgg |
1600543 |
T |
|
| Q |
119 |
gctaatttcaaatgcctaattttacaacatctctttaaaacttgacaaataccttc |
174 |
Q |
| |
|
||||| |||||||| ||||||||| || ||||| |||||||||||||||||||||| |
|
|
| T |
1600544 |
gctaagttcaaatgtctaattttagaaaatctccttaaaacttgacaaataccttc |
1600599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 174
Target Start/End: Complemental strand, 55908820 - 55908647
Alignment:
| Q |
1 |
acaactcttcgagatcacatagagtgtttcatcatcaaccattgtatttgacaagtctaacacctccagttttggagcttcaaagttcattccaagtagc |
100 |
Q |
| |
|
|||| |||| ||||||| ||||||||||||||||||||| ||||| |||||||| |||||||| | || ||| ||| |||||| |||| |||||| |
|
|
| T |
55908820 |
acaattctttgagatcatatagagtgtttcatcatcaacacatgtatgtgacaagttaaacacctctaattcaggaactttaaagtttattctaagtagt |
55908721 |
T |
|
| Q |
101 |
ttcagttttgaacagtaagctaatttcaaatgcctaattttacaacatctctttaaaacttgacaaataccttc |
174 |
Q |
| |
|
|||| | |||||||||| ||||| |||||||| |||| |||||||||||| ||| ||||| |||||||||||| |
|
|
| T |
55908720 |
ttcactcttgaacagtaggctaaattcaaatgtctaaccttacaacatctccttagaacttcacaaataccttc |
55908647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 8187183 - 8186959
Alignment:
| Q |
1 |
acaactcttcgagatcacatagagtgtttcatcatcaaccattgtatttgacaagtctaacacctccagttttggagcttcaaagttcattccaagtagc |
100 |
Q |
| |
|
||||||||| || || |||| ||||||| ||||||||| |||||| |||||||| |||||||||||||| | | ||||||||||||||| ||| |
|
|
| T |
8187183 |
acaactctttgaaattgcataaagtgttttatcatcaactcttgtatgtgacaagttcaacacctccagtttggaaatttcaaagttcattccggagagc |
8187084 |
T |
|
| Q |
101 |
ttcagttttgaacagtaagctaatttcaaatgcctaattttacaacatctctttaaaacttgacaaatac---cttcggatatctcatagcaatgagtta |
197 |
Q |
| |
|
| | ||| |||||| ||||| ||||||| |||||| | |||||||||||| |||||||||||||||| |||| ||||| |||||||||||| | | |
|
|
| T |
8187083 |
ccaactcttggacagtaggctaagttcaaatccctaatctcacaacatctcttcaaaacttgacaaataccttcttcagatatgtcatagcaatgactca |
8186984 |
T |
|
| Q |
198 |
aatcaagaagctgcagattggggaa |
222 |
Q |
| |
|
||||||| | ||||| ||||||||| |
|
|
| T |
8186983 |
aatcaagcaactgcaaattggggaa |
8186959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 174
Target Start/End: Complemental strand, 1524578 - 1524405
Alignment:
| Q |
1 |
acaactcttcgagatcacatagagtgtttcatcatcaaccattgtatttgacaagtctaacacctccagttttggagcttcaaagttcattccaagtagc |
100 |
Q |
| |
|
|||||||| ||||||| ||||||||||||||||||||| ||||| |||||| | |||||||||| || ||| ||||||||||||||||| | || |
|
|
| T |
1524578 |
acaactctgtgagatcatatagagtgtttcatcatcaacacttgtacgtgacaaattcaacacctccaaattgggaacttcaaagttcattccatgaagt |
1524479 |
T |
|
| Q |
101 |
ttcagttttgaacagtaagctaatttcaaatgcctaattttacaacatctctttaaaacttgacaaataccttc |
174 |
Q |
| |
|
| | ||| ||||||| ||||| ||||||||||||| ||||||||||||| ||||||| ||| ||||||||| |
|
|
| T |
1524478 |
tctattttagaacagttggctaagttcaaatgcctaagtttacaacatctccttaaaacctgaagaataccttc |
1524405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 173
Target Start/End: Complemental strand, 53761862 - 53761692
Alignment:
| Q |
1 |
acaactcttcgagatcacatagagtgtttcatcatcaaccattgtatttgacaagtctaacacctccagttttggagcttcaaagttcattccaagtagc |
100 |
Q |
| |
|
|||| |||||||||||||| |||||||| ||| | ||| | ||| |||||||| ||| |||| || || ||| || ||||||||||||||| |||| |
|
|
| T |
53761862 |
acaattcttcgagatcaca--gagtgttttatcgttaactttcgtaaatgacaagttcaacgcctctagcttgggaactacaaagttcattccaattagc |
53761765 |
T |
|
| Q |
101 |
ttcagttttgaacagtaagctaatttcaaatgcctaattttacaacatctctttaaaacttgacaaatacctt |
173 |
Q |
| |
|
|||| | ||||||| | ||||| |||||||||||||| |||||||||||| ||||||||||||||||||||| |
|
|
| T |
53761764 |
ttcactcttgaacactcggctaagttcaaatgcctaatgttacaacatctccttaaaacttgacaaatacctt |
53761692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 49 - 159
Target Start/End: Original strand, 644885 - 644995
Alignment:
| Q |
49 |
tgacaagtctaacacctccagttttggagcttcaaagttcattccaagtagcttcagttttgaacagtaagctaatttcaaatgcctaattttacaacat |
148 |
Q |
| |
|
|||||||||||||||||||||||| ||| |||||||||||| | ||||||||||||| |||||||| || ||| |||||||| ||||| ||||||||| |
|
|
| T |
644885 |
tgacaagtctaacacctccagtttgggaacttcaaagttcaatgtaagtagcttcagtcttgaacagcgagttaaattcaaatgtctaatgttacaacat |
644984 |
T |
|
| Q |
149 |
ctctttaaaac |
159 |
Q |
| |
|
|| ||||||| |
|
|
| T |
644985 |
atcattaaaac |
644995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 49 - 294
Target Start/End: Complemental strand, 21834422 - 21834177
Alignment:
| Q |
49 |
tgacaagtctaacacctccagttttggagcttcaaagttcattccaagtagcttcagttttgaacagtaagctaatttcaaatgcctaattttacaacat |
148 |
Q |
| |
|
||||||||| ||||||||||| || ||| || ||||||| || | | ||||||||| ||| |||| | ||| ||||||||| |||| ||||||||| |
|
|
| T |
21834422 |
tgacaagtccaacacctccagcttgggaactacaaagttgatactatgtagcttcactttataacaacctgataagttcaaatgcttaatcttacaacat |
21834323 |
T |
|
| Q |
149 |
ctctttaaaacttgacaaataccttcggatatctcatagcaatgagttaaatcaagaagctgcagattggggaaaatggaagcaatcattatgatgctct |
248 |
Q |
| |
|
|| ||||||||| ||||||||||| ||||||| | || ||| |||||||| ||||| | |||||||||||| ||||||| ||||||||| || | |
|
|
| T |
21834322 |
ttccttaaaacttcgcaaataccttctgatatctgtgtggaagaagtcaaatcaagcagctgtaaattggggaaaattgaagcaaacattatgattcttt |
21834223 |
T |
|
| Q |
249 |
cctctcttaaccatggattgtgatccaactggagagactttaattg |
294 |
Q |
| |
|
| || ||||||||| |||| | |||| ||||||||||||||| |
|
|
| T |
21834222 |
catcatttaaccatgaattgcggcccaaaaagagagactttaattg |
21834177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 11 - 92
Target Start/End: Complemental strand, 1519224 - 1519143
Alignment:
| Q |
11 |
gagatcacatagagtgtttcatcatcaaccattgtatttgacaagtctaacacctccagttttggagcttcaaagttcattc |
92 |
Q |
| |
|
|||||||||||||||| || ||||||||| |||||| |||||||| |||||||| ||||| ||| ||||||||||||||| |
|
|
| T |
1519224 |
gagatcacatagagtgcttattcatcaacccttgtatgtgacaagttcaacacctctagtttgggaacttcaaagttcattc |
1519143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 8184122 - 8183887
Alignment:
| Q |
1 |
acaactcttcgagatcacatagagtgtttcatcatcaaccattgtatttgacaagtctaacacctccagttttggagcttcaaagttcattccaagtagc |
100 |
Q |
| |
|
||||||||| ||||| ||||||||| | ||||||||| |||||| |||||||| |||||||| ||||| ||| ||||||||||||||| ||| |
|
|
| T |
8184122 |
acaactctttgagattgcatagagtgctatatcatcaactcttgtatgtgacaagttcaacacctctagtttcggaacttcaaagttcattctgctcagc |
8184023 |
T |
|
| Q |
101 |
ttcagttttgaacagtaagctaatttcaaatgcctaattttacaacatctctttaaaacttgacaaatacc---ttcggatatctcatagcaatgagtta |
197 |
Q |
| |
|
||| ||||| | ||||||||| ||||||| ||||| | |||||| ||| |||||| |||| |||||| ||| || || ||| |||||||| | | |
|
|
| T |
8184022 |
ctcatttttggaatgtaagctaagttcaaatctctaatctcacaacaactccttaaaatttgagtaatacctttttcagaaatgtcaaagcaatgactca |
8183923 |
T |
|
| Q |
198 |
aatcaagaagctgcagattggggaaaatggaagcaa |
233 |
Q |
| |
|
||||||| |||||| ||||||||| | |||||||| |
|
|
| T |
8183922 |
aatcaagccgctgcaaattggggaacacggaagcaa |
8183887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 22 - 163
Target Start/End: Complemental strand, 12116646 - 12116505
Alignment:
| Q |
22 |
gagtgtttcatcatcaaccattgtatttgacaagtctaacacctccagttttggagcttcaaagttcattccaagtagcttcagttttgaacagtaagct |
121 |
Q |
| |
|
||||| |||||||||||| |||||| |||||||| |||||||| | |||||| | ||||||||||||| | | || || | |||||||||||| ||| |
|
|
| T |
12116646 |
gagtgattcatcatcaacacttgtatgtgacaagttcaacacctctaaatttggaacatcaaagttcattctacgcagttttatttttgaacagtaggct |
12116547 |
T |
|
| Q |
122 |
aatttcaaatgcctaattttacaacatctctttaaaacttga |
163 |
Q |
| |
|
|| || ||||||| | ||||||||||||| |||||| |||| |
|
|
| T |
12116546 |
aagttttaatgccttagtttacaacatctccttaaaatttga |
12116505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 6 - 99
Target Start/End: Original strand, 640927 - 641020
Alignment:
| Q |
6 |
tcttcgagatcacatagagtgtttcatcatcaaccattgtatttgacaagtctaacacctccagttttggagcttcaaagttcattccaagtag |
99 |
Q |
| |
|
|||| ||| |||| |||||||||||||||||||| |||||| |||||||| |||||||||| | |||| |||||| |||||||||||||| |
|
|
| T |
640927 |
tctttgaggtcacgtagagtgtttcatcatcaacgtttgtatctgacaagttcaacacctccaatattggtagttcaaatttcattccaagtag |
641020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 11 - 174
Target Start/End: Original strand, 659728 - 659889
Alignment:
| Q |
11 |
gagatcacatagagtgtttcatcatcaaccattgtatttgacaagtctaacacctccagttttggagcttcaaagttcattccaagtagcttcagttttg |
110 |
Q |
| |
|
|||||||||||| |||||||| || ||| |||||| |||||||| |||||||| ||||| ||| ||||||| || ||| | |||||||| | ||| |
|
|
| T |
659728 |
gagatcacatag--tgtttcattattaacacttgtatgtgacaagttcaacacctctagtttgggaacttcaaaatttattactcgtagcttccctcttg |
659825 |
T |
|
| Q |
111 |
aacagtaagctaatttcaaatgcctaattttacaacatctctttaaaacttgacaaataccttc |
174 |
Q |
| |
|
||||| | ||||| || |||| ||||| |||||||||||| |||||| ||||| |||| |||| |
|
|
| T |
659826 |
aacagcaggctaagtttaaatatctaatgttacaacatctccttaaaatttgaccaatatcttc |
659889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 1513499 - 1513407
Alignment:
| Q |
1 |
acaactcttcgagatcacatagagtgtttcatcatcaaccattgtatttgacaagtctaacacctccagttttggagcttcaaagttcattcc |
93 |
Q |
| |
|
||||| ||| ||||| || |||||||||||||||||||| ||||| |||||||| ||||| || ||||| ||| |||||||||||||||| |
|
|
| T |
1513499 |
acaacactttgagattacgtagagtgtttcatcatcaacatttgtaaatgacaagttcaacacttctagtttgggaacttcaaagttcattcc |
1513407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 21 - 92
Target Start/End: Complemental strand, 12121529 - 12121458
Alignment:
| Q |
21 |
agagtgtttcatcatcaaccattgtatttgacaagtctaacacctccagttttggagcttcaaagttcattc |
92 |
Q |
| |
|
||||||||||||||||||| |||||| |||||||| ||||| || ||||| ||| ||||||||||||||| |
|
|
| T |
12121529 |
agagtgtttcatcatcaacatttgtatatgacaagttcaacacttctagtttgggaacttcaaagttcattc |
12121458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 159
Target Start/End: Original strand, 553486 - 553644
Alignment:
| Q |
1 |
acaactcttcgagatcacatagagtgtttcatcatcaaccattgtatttgacaagtctaacacctccagttttggagcttcaaagttcattccaagtagc |
100 |
Q |
| |
|
||||||||| || ||||||| |||| |||||||||||| ||||| |||||||| |||||||||||||| || ||| |||||||| | | ||| | |
|
|
| T |
553486 |
acaactctttgaaatcacattaagtgcttcatcatcaactcttgtaaatgacaagttcaacacctccagtttgagaactttaaagttcaatgtacgtaac |
553585 |
T |
|
| Q |
101 |
ttcagttttgaacagtaagctaatttcaaatgcctaattttacaacatctctttaaaac |
159 |
Q |
| |
|
|||| | |||||||| | ||| |||||||| ||||| ||||||||| || ||||||| |
|
|
| T |
553586 |
ttcactcttgaacagcgggttaagttcaaatgtctaatgttacaacatgtccttaaaac |
553644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 1552859 - 1552757
Alignment:
| Q |
1 |
acaactcttcgagatcacatagagtgtttcatcatcaaccattgtatttgacaagtctaacacctccagttttggagcttcaaagttcattccaagtagc |
100 |
Q |
| |
|
|||| |||| || ||||||| |||||||||||||| || |||||| |||||| | ||||| |||||||| ||| ||||||||||| |||||||||| |
|
|
| T |
1552859 |
acaattctttgatatcacattgagtgtttcatcattaatatttgtatgtgacaaattcaacacttccagtttgggaatttcaaagttcagtccaagtagc |
1552760 |
T |
|
| Q |
101 |
ttc |
103 |
Q |
| |
|
||| |
|
|
| T |
1552759 |
ttc |
1552757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 85 - 175
Target Start/End: Complemental strand, 12120150 - 12120060
Alignment:
| Q |
85 |
gttcattccaagtagcttcagttttgaacagtaagctaatttcaaatgcctaattttacaacatctctttaaaacttgacaaataccttcg |
175 |
Q |
| |
|
||||||| |||| |||||||| ||||||||| || || |||||||| ||||| |||| || | ||||||||||||||| |||||||||| |
|
|
| T |
12120150 |
gttcattataagttgcttcagtcttgaacagtgggcaaagttcaaatgtctaatcttactacttttctttaaaacttgaccaataccttcg |
12120060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 55505200 - 55505070
Alignment:
| Q |
1 |
acaactcttcgagatcacatagagtgtttcatcatcaaccattgtatttgacaagtctaacacctccagttttggagcttcaaagttcattccaagtagc |
100 |
Q |
| |
|
|||| |||| ||| ||||||| |||||| |||| |||||| |||||| |||||||| |||||||| |||| || || |||||||||||||| ||| |
|
|
| T |
55505200 |
acaattctttgaggtcacataaagtgttccatcgtcaacctttgtatatgacaagttcaacacctctagttgggggactctaaagttcattccaattagg |
55505101 |
T |
|
| Q |
101 |
ttcagttttgaacagtaagctaatttcaaat |
131 |
Q |
| |
|
|||| | |||||||||| |||| ||||||| |
|
|
| T |
55505100 |
ttcactgttgaacagtaggctaggttcaaat |
55505070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 11 - 104
Target Start/End: Original strand, 566206 - 566299
Alignment:
| Q |
11 |
gagatcacatagagtgtttcatcatcaaccattgtatttgacaagtctaacacctccagttttggagcttcaaagttcattccaagtagcttca |
104 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| | ||| || || ||| || |||||| || ||||||||||||||||| ||||||||| |
|
|
| T |
566206 |
gagatcacatagagtgtttcatcatcaacgcttgaacatgataaatccaacgtttcaagttttagaacttcaaagttcattccacgtagcttca |
566299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 532196 - 532299
Alignment:
| Q |
1 |
acaactcttcgagatcacatagagtgtttcatcatcaaccattgtatttgacaagtctaacacctccagttttggagcttcaaagttcattccaagtagc |
100 |
Q |
| |
|
|||| |||| ||| ||||||| || |||||||||||| |||||| |||||||| |||||||| || || || |||||||||||||||||||||| |
|
|
| T |
532196 |
acaattctttgaggtcacataaagcttttcatcatcaatgtttgtatatgacaagttcaacacctctagcttggggacttcaaagttcattccaagtaga |
532295 |
T |
|
| Q |
101 |
ttca |
104 |
Q |
| |
|
|||| |
|
|
| T |
532296 |
ttca |
532299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 96 - 167
Target Start/End: Complemental strand, 7225880 - 7225809
Alignment:
| Q |
96 |
gtagcttcagttttgaacagtaagctaatttcaaatgcctaattttacaacatctctttaaaacttgacaaa |
167 |
Q |
| |
|
||||||||| | ||| |||||| | ||| |||||||| ||||| |||||||||||| |||||||||||||| |
|
|
| T |
7225880 |
gtagcttcactcttggacagtaggataagttcaaatgtctaatcttacaacatctccgtaaaacttgacaaa |
7225809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 240
Target Start/End: Original strand, 570735 - 570780
Alignment:
| Q |
195 |
ttaaatcaagaagctgcagattggggaaaatggaagcaatcattat |
240 |
Q |
| |
|
|||||||||| || |||| |||||||||||||||||||| |||||| |
|
|
| T |
570735 |
ttaaatcaagtagttgcaaattggggaaaatggaagcaaacattat |
570780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 174
Target Start/End: Complemental strand, 1519111 - 1519062
Alignment:
| Q |
125 |
ttcaaatgcctaattttacaacatctctttaaaacttgacaaataccttc |
174 |
Q |
| |
|
|||||||||||||| | |||||||| |||||||||||||||||||||| |
|
|
| T |
1519111 |
ttcaaatgcctaatccttcaacatcttcttaaaacttgacaaataccttc |
1519062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 163
Target Start/End: Complemental strand, 3438541 - 3438496
Alignment:
| Q |
118 |
agctaatttcaaatgcctaattttacaacatctctttaaaacttga |
163 |
Q |
| |
|
|||||| |||||||| ||||| |||||||||||| ||||||||||| |
|
|
| T |
3438541 |
agctaagttcaaatgtctaatcttacaacatctccttaaaacttga |
3438496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 209 - 309
Target Start/End: Complemental strand, 1504992 - 1504892
Alignment:
| Q |
209 |
tgcagattggggaaaatggaagcaatcattatgatgctctcctctcttaaccatggattgtgatccaactggagagactttaattgcggtcttacaacaa |
308 |
Q |
| |
|
|||| ||||||||||| |||||||||| || |||||| || |||| ||| |||||||| | ||| ||||||||||||||||| || | |||||||| |
|
|
| T |
1504992 |
tgcaaattggggaaaacggaagcaatcgtttggatgctttcatctcgtaaacatggattaaaaatcaaatggagagactttaattgagggcctacaacaa |
1504893 |
T |
|
| Q |
309 |
a |
309 |
Q |
| |
|
| |
|
|
| T |
1504892 |
a |
1504892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 333
Target Start/End: Complemental strand, 10634246 - 10634194
Alignment:
| Q |
281 |
agagactttaattgcggtcttacaacaaaacccatcaaagaattagaattctc |
333 |
Q |
| |
|
|||||||| | ||| |||||| |||||||| || ||||||||||||||||||| |
|
|
| T |
10634246 |
agagacttaagttgaggtcttccaacaaaatccctcaaagaattagaattctc |
10634194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 89; Significance: 8e-43; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 6 - 294
Target Start/End: Original strand, 10614605 - 10614893
Alignment:
| Q |
6 |
tcttcgagatcacatagagtgtttcatcatcaaccattgtatttgacaagtctaacacctccagttttggagcttcaaagttcattccaagtagcttcag |
105 |
Q |
| |
|
|||||||||||||||||||||||| ||||| |||| | ||||||||||||| ||||||||||| || ||| | ||| |||||||||||||||||||| |
|
|
| T |
10614605 |
tcttcgagatcacatagagtgttttatcattaaccttcgtatttgacaagttcaacacctccagattgggaacaacaacgttcattccaagtagcttcac |
10614704 |
T |
|
| Q |
106 |
ttttgaacagtaagctaatttcaaatgcctaattttacaacatctctttaaaacttgacaaataccttcggatatctcatagcaatgagttaaatcaaga |
205 |
Q |
| |
|
|||| ||| || ||||| |||||||||||||| ||||||||| || |||||||||||||||||||||| ||| || |||| || | |||||||| |
|
|
| T |
10614705 |
ttttttacaataggctaagttcaaatgcctaatcttacaacatatccttaaaacttgacaaataccttcatataagagattgcaacgattcaaatcaagc |
10614804 |
T |
|
| Q |
206 |
agctgcagattggggaaaatggaagcaatcattatgatgctctcctctcttaaccatggattgtgatccaactggagagactttaattg |
294 |
Q |
| |
|
|| |||| |||||||||| ||||||||| | |||| |||| || || |||||||| |||| | |||| | ||||||||||||||| |
|
|
| T |
10614805 |
agttgcaaattggggaaattggaagcaaactttataatgccttcatcgcttaaccactgattttttcccaaatagagagactttaattg |
10614893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 294
Target Start/End: Complemental strand, 15092243 - 15091950
Alignment:
| Q |
1 |
acaactcttcgagatcacatagagtgtttcatcatcaaccattgtatttgacaagtctaacacctccagttttggagcttcaaagttcattccaagtagc |
100 |
Q |
| |
|
|||| |||| |||||| |||||||||||| ||||| |||| |||| | |||||| | ||||||||||| | ||| || |||||||||||||| |||| |
|
|
| T |
15092243 |
acaattctttgagatcgcatagagtgttttatcattaacctttgtttctgacaaattcaacacctccagctcgggaactgcaaagttcattccatgtagt |
15092144 |
T |
|
| Q |
101 |
ttcagttttgaacagtaagctaatttcaaatgcctaattttacaacatctctttaaaacttgacaaataccttcggatatctcatagcaatgagttaaat |
200 |
Q |
| |
|
|||| || |||| || ||| |||||||| ||| ||| ||||| || ||||||||||| ||||||||| ||||| | |||||||||| |||| |
|
|
| T |
15092143 |
ttcacacttaaacatccagttaagttcaaatgtttaagcttataacatttccttaaaacttgagaaataccttgagatatgttatagcaatgacccaaat |
15092044 |
T |
|
| Q |
201 |
caagaagctgcagattggggaaaatggaagcaatcattatgatgctctcctctcttaaccatggattgtgatccaactggagagactttaattg |
294 |
Q |
| |
|
|||| |||| | ||||||||||||||||||| ||| ||||| | || || ||||||| ||||||| |||| | ||||||||||||||| |
|
|
| T |
15092043 |
caagtagctctaagttggggaaaatggaagcaagtattctgatgatttcatcacttaaccggtaattgtgagccaaatagagagactttaattg |
15091950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 83 - 335
Target Start/End: Complemental strand, 10170140 - 10169888
Alignment:
| Q |
83 |
aagttcattccaagtagcttcagttttgaacagtaagctaatttcaaatgcctaattttacaacatctctttaaaacttgacaaataccttcggatatct |
182 |
Q |
| |
|
||||||| | ||||||| |||| | ||||||||| ||||| || ||||||||||| ||| |||| ||| |||||||||||||||| ||||| ||||| | |
|
|
| T |
10170140 |
aagttcacttcaagtagattcactcttgaacagtgggctaaatttaaatgcctaatattagaacacctccttaaaacttgacaaatgccttccgatatgt |
10170041 |
T |
|
| Q |
183 |
catagcaatgagtt-aaatcaagaagctgcagattggggaaaatggaagcaatcattatgatgctctcctctcttaaccatggattgtgatccaactgga |
281 |
Q |
| |
|
|| |||| ||||| ||||||| |||| || ||| || |||||||||| || |||||||||| || || |||| ||||| ||||| | |||| | || |
|
|
| T |
10170040 |
gattgcaa-gagttcaaatcaaacagcttcaaattaggaaaaatggaagaaaacattatgatgtgttcatcccttacccatgtattgtaagccaaataga |
10169942 |
T |
|
| Q |
282 |
gagactttaattgcggtcttacaacaaaacccatcaaagaattagaattctcta |
335 |
Q |
| |
|
||||||| ||||| || |||| ||||| || |||||||| |||||| |||| |
|
|
| T |
10169941 |
gagacttcaattgagggtatacaccaaaatccggcaaagaatcagaattgtcta |
10169888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 83 - 335
Target Start/End: Complemental strand, 10177665 - 10177413
Alignment:
| Q |
83 |
aagttcattccaagtagcttcagttttgaacagtaagctaatttcaaatgcctaattttacaacatctctttaaaacttgacaaataccttcggatatct |
182 |
Q |
| |
|
||||||| | ||||||| |||| | ||||||||| ||||| || ||||||||||| ||| |||| ||| |||||||||||||||| ||||| ||||| | |
|
|
| T |
10177665 |
aagttcacttcaagtagattcactcttgaacagtgggctaaatttaaatgcctaatattagaacacctccttaaaacttgacaaatgccttccgatatgt |
10177566 |
T |
|
| Q |
183 |
catagcaatgagtt-aaatcaagaagctgcagattggggaaaatggaagcaatcattatgatgctctcctctcttaaccatggattgtgatccaactgga |
281 |
Q |
| |
|
|| |||| ||||| ||||||| |||| || ||| || |||||||||| || |||||||||| || || |||| ||||| ||||| | |||| | || |
|
|
| T |
10177565 |
gattgcaa-gagttcaaatcaaacagcttcaaattaggaaaaatggaagaaaacattatgatgtgttcatcccttacccatgtattgtaagccaaataga |
10177467 |
T |
|
| Q |
282 |
gagactttaattgcggtcttacaacaaaacccatcaaagaattagaattctcta |
335 |
Q |
| |
|
||||||| ||||| || |||| ||||| || |||||||| |||||| |||| |
|
|
| T |
10177466 |
gagacttcaattgagggtatacaccaaaatccggcaaagaatcagaattgtcta |
10177413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 19 - 174
Target Start/End: Original strand, 7977603 - 7977758
Alignment:
| Q |
19 |
atagagtgtttcatcatcaaccattgtatttgacaagtctaacacctccagttttggagcttcaaagttcattccaagtagcttcagttttgaacagtaa |
118 |
Q |
| |
|
||||||||||| ||||||||| |||||| |||||||| || |||| ||||| | | || || ||||||||| |||| |||| ||||||| | |
|
|
| T |
7977603 |
atagagtgttttatcatcaactgttgtatgtgacaagttcaaagcctcgagtttgcaaacgtcgaatttcattccacgtagattcacccttgaacaacag |
7977702 |
T |
|
| Q |
119 |
gctaatttcaaatgcctaattttacaacatctctttaaaacttgacaaataccttc |
174 |
Q |
| |
|
|||| || ||||| ||||| |||||||||||| |||||||||||| ||||||||| |
|
|
| T |
7977703 |
gctaggtttaaatgtctaatgttacaacatctccttaaaacttgaccaataccttc |
7977758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 78; Significance: 3e-36; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 1 - 174
Target Start/End: Complemental strand, 45245177 - 45245004
Alignment:
| Q |
1 |
acaactcttcgagatcacatagagtgtttcatcatcaaccattgtatttgacaagtctaacacctccagttttggagcttcaaagttcattccaagtagc |
100 |
Q |
| |
|
||||||||| |||||||||| |||||||||||||||||||||||| | |||||| | |||||||| ||||||||| |||||||||| |||||| ||| |
|
|
| T |
45245177 |
acaactctttgagatcacatggagtgtttcatcatcaaccattgtctctgacaaattcaacacctcaagttttggaacttcaaagtttattccacgtaat |
45245078 |
T |
|
| Q |
101 |
ttcagttttgaacagtaagctaatttcaaatgcctaattttacaacatctctttaaaacttgacaaataccttc |
174 |
Q |
| |
|
| |||| |||||||| || |||| || ||||||||||| |||||||||||| ||||||| ||||| || ||||| |
|
|
| T |
45245077 |
tccagtcttgaacagcaaactaagtttaaatgcctaatgttacaacatctccttaaaacatgacacattccttc |
45245004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 174
Target Start/End: Complemental strand, 1037756 - 1037583
Alignment:
| Q |
1 |
acaactcttcgagatcacatagagtgtttcatcatcaaccattgtatttgacaagtctaacacctccagttttggagcttcaaagttcattccaagtagc |
100 |
Q |
| |
|
|||| |||| ||||||| ||||||||||||||||||||| ||||| |||||||| |||||||| | || ||| ||| |||||| |||| |||||| |
|
|
| T |
1037756 |
acaattctttgagatcatatagagtgtttcatcatcaacacatgtatgtgacaagttaaacacctctaattcaggaactttaaagtttattctaagtagt |
1037657 |
T |
|
| Q |
101 |
ttcagttttgaacagtaagctaatttcaaatgcctaattttacaacatctctttaaaacttgacaaataccttc |
174 |
Q |
| |
|
|||| | ||||| |||| ||||| |||||||| |||| |||||||||||| ||||||||| |||||||||||| |
|
|
| T |
1037656 |
ttcactcttgaatagtaggctaaattcaaatgtctaaccttacaacatctccttaaaacttcacaaataccttc |
1037583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 11 - 330
Target Start/End: Complemental strand, 32785854 - 32785535
Alignment:
| Q |
11 |
gagatcacatagagtgtttcatcatcaaccattgtatttgacaagtctaacacctccagttttggagcttcaaagttcattccaagtagcttcagttttg |
110 |
Q |
| |
|
||||||||||| |||| ||||||||||| |||||| |||||||| |||||||| ||||| ||||||| ||||||||||| | | ||| | | ||| |
|
|
| T |
32785854 |
gagatcacataaagtgcttcatcatcaattcttgtatgtgacaagttcaacacctctagtttgggagctttaaagttcattcgacggtgctcgattcttg |
32785755 |
T |
|
| Q |
111 |
aacagtaagctaatttcaaatgcctaattttacaacatctctttaaaacttgacaaataccttcg---gatatctcatagcaatgagttaaatcaagaag |
207 |
Q |
| |
|
|| ||| | || |||||||| ||||| ||| ||||||| ||||| ||||||||||||||| ||||| | |||||||| | |||||||| || |
|
|
| T |
32785754 |
aaaagtggtccaaattcaaatgtctaatcttagaacatct---taaaaattgacaaataccttcttcagatatgttatagcaatagctcaaatcaagtag |
32785658 |
T |
|
| Q |
208 |
ctgcagattggggaaaatggaagcaatcattatgatgctctcctctcttaaccatggattgtgatccaactggagagactttaattgcggtcttacaaca |
307 |
Q |
| |
|
|||| ||||| ||||| |||| || ||| ||||||| || ||||||||||| |||| || |||| |||||| |||||||||| || |||||||| |
|
|
| T |
32785657 |
ttgcaaattggaaaaaatagaagaaaacatcctgatgctttcatctcttaaccaataattgcgagccaaatggagaaactttaattgagggattacaaca |
32785558 |
T |
|
| Q |
308 |
aaacccatcaaagaattagaatt |
330 |
Q |
| |
|
||| ||||||||||||||||||| |
|
|
| T |
32785557 |
aaatccatcaaagaattagaatt |
32785535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 125 - 161
Target Start/End: Complemental strand, 43277428 - 43277392
Alignment:
| Q |
125 |
ttcaaatgcctaattttacaacatctctttaaaactt |
161 |
Q |
| |
|
||||||||| ||||||||||||||||| ||||||||| |
|
|
| T |
43277428 |
ttcaaatgcgtaattttacaacatctccttaaaactt |
43277392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 73; Significance: 3e-33; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 337
Target Start/End: Complemental strand, 17636493 - 17636150
Alignment:
| Q |
1 |
acaactcttcgagatcacatagagtgtttcatcatcaaccattgtatttgacaagtctaacacctccagttttggagcttcaaagttcattccaa----g |
96 |
Q |
| |
|
||||||||| ||||||||||| | || |||||| ||||| ||| | |||||||| |||||||||| ||| ||| ||||||||||||||| | | |
|
|
| T |
17636493 |
acaactctttgagatcacatacaatgcttcatcgtcaactcctgtttgtgacaagttcaacacctccaatttgggaacttcaaagttcattcgatcgatg |
17636394 |
T |
|
| Q |
97 |
tagcttcagttttgaacagtaagctaatttcaaatgcctaattttacaacatctctttaaaacttgacaaatacctt---cggatatctcatagcaatga |
193 |
Q |
| |
|
||| |||| | ||||||| |||| |||||||||||||| ||| |||||| | ||||||||||||||||||||| | ||||| | || ||||| |
|
|
| T |
17636393 |
tagtttcactcttgaacatcggcctaagttcaaatgcctaatattagaacatccccttaaaacttgacaaatacctttctctgatattttattgcaatct |
17636294 |
T |
|
| Q |
194 |
gttaaatcaagaagctgcagattggggaaaatggaagcaatcattatgatgctctcctctcttaaccatggattgtgatccaactggagagactttaatt |
293 |
Q |
| |
|
||||||||| ||||||| |||||||||||||| | | | | |||||| ||| || ||||||||||||| ||||| | ||| ||||||||||| |||| |
|
|
| T |
17636293 |
cgtaaatcaagcagctgcaaattggggaaaatggtatcgagctttatgaggctttcatctcttaaccatgaattgtaaggcaaatggagagacttaaatt |
17636194 |
T |
|
| Q |
294 |
gcggtcttacaacaaaacccatcaaagaattagaattctctaca |
337 |
Q |
| |
|
| || ||||||||||| |||| |||||||||||||||||||| |
|
|
| T |
17636193 |
gagggtttacaacaaaattcatcgaagaattagaattctctaca |
17636150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 1 - 268
Target Start/End: Complemental strand, 18315365 - 18315095
Alignment:
| Q |
1 |
acaactcttcgagatcacatagagtgtttcatcatcaaccattgtatttgacaagtctaacacctccagttttggagcttcaaagttcattccaagtagc |
100 |
Q |
| |
|
||||||||| |||||||||||||||| |||||||||||| |||||| |||||||| |||||||||||||| ||| ||| ||||||||||||| ||||| |
|
|
| T |
18315365 |
acaactctttgagatcacatagagtgcttcatcatcaacttttgtatgtgacaagttcaacacctccagtttgggaactttaaagttcattccacgtagc |
18315266 |
T |
|
| Q |
101 |
ttcagttttgaacagtaagctaatttcaaatgcctaattttacaacatctctttaaaacttgacaaatac---cttcggatatctcatagcaatgagtta |
197 |
Q |
| |
|
|||| | ||||| |||||| ||||| || ||||| | | |||| || ||||||||||||||||| |||| | ||| | || ||| | | | |
|
|
| T |
18315265 |
ttcattcttgaatcacgagctaagttcaactgtctaatctcagaacaacttcgtaaaacttgacaaataccttcttcaggtatgttatcgcagtagctca |
18315166 |
T |
|
| Q |
198 |
aatcaagaagctgcagattggggaaaatggaagcaatcattatgatgctctcctctcttaaccatggattg |
268 |
Q |
| |
|
||||||| | ||||| ||||||||||||||||| || ||| ||||||| |||||||||||||||| |||| |
|
|
| T |
18315165 |
aatcaagcaactgcaaattggggaaaatggaagaaaatattttgatgctttcctctcttaaccatgaattg |
18315095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 32151308 - 32151411
Alignment:
| Q |
1 |
acaactcttcgagatcacatagagtgtttcatcatcaaccattgtatttgacaagtctaacacctccagttttggagcttcaaagttcattccaagtagc |
100 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||| | ||||| |||||||| |||||||||||| || | | |||| |||||||||||| | ||| |
|
|
| T |
32151308 |
acaactctttgagatcacatagagtgtttcatcatcaaaccttgtacatgacaagtttaacacctccagattggaaacttcgaagttcattccacgcagc |
32151407 |
T |
|
| Q |
101 |
ttca |
104 |
Q |
| |
|
|||| |
|
|
| T |
32151408 |
ttca |
32151411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 1 - 173
Target Start/End: Complemental strand, 34936255 - 34936083
Alignment:
| Q |
1 |
acaactcttcgagatcacatagagtgtttcatcatcaaccattgtatttgacaagtctaacacctccagttttggagcttcaaagttcattccaagtagc |
100 |
Q |
| |
|
||||||||| | ||| |||||||||||| ||||||||| |||||| ||||||||| |||||||| ||||||||| | |||||| |||||| | || |
|
|
| T |
34936255 |
acaactctttgcgatggcatagagtgttttatcatcaactcttgtatatgacaagtccaacacctctagttttggaacatcaaagatcattctgtgaagg |
34936156 |
T |
|
| Q |
101 |
ttcagttttgaacagtaagctaatttcaaatgcctaattttacaacatctctttaaaacttgacaaatacctt |
173 |
Q |
| |
|
|||| ||||||||| | || || | |||||| ||||| | |||||||||| ||||||| ||| ||||||||| |
|
|
| T |
34936155 |
ttcacttttgaacaatcggccaagtacaaatgtctaatgtcacaacatctccttaaaacatgataaatacctt |
34936083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 174
Target Start/End: Complemental strand, 28246385 - 28246214
Alignment:
| Q |
1 |
acaactcttcgagatcacatagagtgtttcatcatcaaccattgtatttgacaagtctaacacctccagttttggagcttcaaagttcattccaagtagc |
100 |
Q |
| |
|
||||||||| |||||| |||||||| || || ||||| ||||| ||||||||| |||||||||||||| ||| |||||||||||| | | ||||| |
|
|
| T |
28246385 |
acaactctttgagatccaatagagtgatttat--tcaactcttgtaaatgacaagtccaacacctccagtttgggaacttcaaagttcaatgtatgtagc |
28246288 |
T |
|
| Q |
101 |
ttcagttttgaacagtaagctaatttcaaatgcctaattttacaacatctctttaaaacttgacaaataccttc |
174 |
Q |
| |
|
|||||| ||||||| || ||| |||||||| ||||| ||||||||| || ||||||| ||| ||||||||| |
|
|
| T |
28246287 |
ttcagtcttgaacaacgagttaaattcaaatgtctaatgttacaacatatcattaaaacatgaacaataccttc |
28246214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 43 - 145
Target Start/End: Original strand, 21235607 - 21235709
Alignment:
| Q |
43 |
tgtatttgacaagtctaacacctccagttttggagcttcaaagttcattccaagtagcttcagttttgaacagtaagctaatttcaaatgcctaatttta |
142 |
Q |
| |
|
||||| |||||||| |||||||||||||| ||| |||||||||||| |||| || |||| |||||| |||| |||||| ||||||||||||| |||| |
|
|
| T |
21235607 |
tgtatatgacaagttcaacacctccagtttgggaacttcaaagttcactccacacagtttcacttttgagcagtgagctaagttcaaatgcctaagttta |
21235706 |
T |
|
| Q |
143 |
caa |
145 |
Q |
| |
|
||| |
|
|
| T |
21235707 |
caa |
21235709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 27922515 - 27922605
Alignment:
| Q |
1 |
acaactcttcgagatcacatagagtgtttcatcatcaaccattgtatttgacaagtctaacacctccagttttggagcttcaaagttcatt |
91 |
Q |
| |
|
||||||||| ||||||| ||| |||| |||||||||||| |||||| |||||||| |||||||||| ||| ||| |||||||||||||| |
|
|
| T |
27922515 |
acaactctttgagatcatataaagtgcttcatcatcaacatttgtatatgacaagttcaacacctccaatttgggaacttcaaagttcatt |
27922605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 195 - 332
Target Start/End: Complemental strand, 17627954 - 17627817
Alignment:
| Q |
195 |
ttaaatcaagaagctgcagattggggaaaatggaagcaatcattatgatgctctcctctcttaaccatggattgtgatccaactggagagactttaattg |
294 |
Q |
| |
|
|||||||||| || |||| |||||||||||||||||||| |||| ||||| | || || | || | ||| |||| | |||| | |||||| |||||||| |
|
|
| T |
17627954 |
ttaaatcaagcagttgcaaattggggaaaatggaagcaaacattttgatgttttcatcgcatagcaatgaattgaaagccaaatagagagattttaattg |
17627855 |
T |
|
| Q |
295 |
cggtcttacaacaaaacccatcaaagaattagaattct |
332 |
Q |
| |
|
|| |||||||| ||| ||| ||||||||||||||||| |
|
|
| T |
17627854 |
agggcttacaacgaaatccaccaaagaattagaattct |
17627817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0295 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: scaffold0295
Description:
Target: scaffold0295; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 174
Target Start/End: Complemental strand, 716 - 543
Alignment:
| Q |
1 |
acaactcttcgagatcacatagagtgtttcatcatcaaccattgtatttgacaagtctaacacctccagttttggagcttcaaagttcattccaagtagc |
100 |
Q |
| |
|
|||| |||||||||||| |||||||||||||||||| || |||||| |||||||| |||||||| | || ||| ||| |||||| |||| |||||| |
|
|
| T |
716 |
acaattcttcgagatcatatagagtgtttcatcatcgacacttgtatgtgacaagttaaacacctctaattcaggaactttaaagtttattctaagtagt |
617 |
T |
|
| Q |
101 |
ttcagttttgaacagtaagctaatttcaaatgcctaattttacaacatctctttaaaacttgacaaataccttc |
174 |
Q |
| |
|
|||| | |||||||||| ||||| |||||||| ||| |||||||||||| ||| ||||| |||||||||||| |
|
|
| T |
616 |
ttcactcttgaacagtaggctaaattcaaatgtctagccttacaacatctccttagaacttcacaaataccttc |
543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 56; Significance: 4e-23; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 327
Target Start/End: Complemental strand, 41889646 - 41889317
Alignment:
| Q |
1 |
acaactcttcgagatcacatagagtgtttcatcatcaaccattgtatttgacaagtctaacacctccagttttggagcttcaaagttcattccaagtagc |
100 |
Q |
| |
|
||||||||| |||||| ||| ||||||||||||||||| |||||| ||| |||| |||||||||| ||| ||| ||| |||||||||| |||||||| |
|
|
| T |
41889646 |
acaactctttgagatcttataaagtgtttcatcatcaacttttgtatatgataagttcaacacctccaatttgggaactttaaagttcatttcaagtagc |
41889547 |
T |
|
| Q |
101 |
ttcagttttgaacagtaagctaatttcaaatgcctaattttacaacatctctttaaaacttgacaaatacct---tcggatatctcatagcaatgagtta |
197 |
Q |
| |
|
|||| | ||||||| | ||| ||||||| ||||| ||||||||| || ||||||||||| ||||||| || |||| | | |||| | | |
|
|
| T |
41889546 |
ttcactattgaacatccggataagttcaaatatctaatgttacaacatatccttaaaacttgagtaataccttcatcaaatatgcgacaacaattgctca |
41889447 |
T |
|
| Q |
198 |
aatcaagaagctgcagattggggaaaatggaagcaatcattatgatgctctcctctcttaaccatggattgtgatccaactggagagactttaattgcgg |
297 |
Q |
| |
|
||||||| ||||||| ||| |||||||||||||||| |||||||||| || ||| |||||||||||| ||| |||| | ||| ||||||||| || |
|
|
| T |
41889446 |
aatcaagtagctgcaaattagggaaaatggaagcaaacattatgatgtcttcatctgataaccatggattttgagccaaacgaagatgctttaattgagg |
41889347 |
T |
|
| Q |
298 |
tcttacaacaaaacccatcaaagaattaga |
327 |
Q |
| |
|
| |||||||| |||||||||| ||||| |
|
|
| T |
41889346 |
gtatgcaacaaaatccatcaaagatttaga |
41889317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 81 - 170
Target Start/End: Original strand, 28525098 - 28525187
Alignment:
| Q |
81 |
caaagttcattccaagtagcttcagttttgaacagtaagctaatttcaaatgcctaattttacaacatctctttaaaacttgacaaatac |
170 |
Q |
| |
|
||||||| ||||||||| |||||| | ||||||||| ||||||||||| ||| || |||||||||||| |||||||||||||||||| |
|
|
| T |
28525098 |
caaagttgattccaagtggcttcattattgaacagttgcttaatttcaaatccctcatcttacaacatctccttaaaacttgacaaatac |
28525187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 41901627 - 41901542
Alignment:
| Q |
1 |
acaactcttcgagatcacatagagtgtttcatcatcaaccattgtatttgacaagtctaacacctccagttttggagcttcaaagt |
86 |
Q |
| |
|
||||||||| ||||||| ||| |||| |||||||||||| |||||| |||||||| |||||||||||||| ||| ||||||||| |
|
|
| T |
41901627 |
acaactctttgagatcatataaagtgcttcatcatcaacttttgtatatgacaagttcaacacctccagtttgggaacttcaaagt |
41901542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 32267482 - 32267641
Alignment:
| Q |
1 |
acaactcttcgagatcacatagagtgtttcatcatcaaccattgtatttgacaagtctaacacctccagttttggagcttcaaagttcattccaagtagc |
100 |
Q |
| |
|
||||||||| ||||||| ||| |||| |||||||||||| ||||| | |||||||| || ||||||| ||| ||| |||||||||||||| | ||| |
|
|
| T |
32267482 |
acaactctttgagatcatataaagtgcttcatcatcaactattgtttgtgacaagttcaatacctccaatttgggaacttcaaagttcatttc---tagt |
32267578 |
T |
|
| Q |
101 |
ttcagttttgaacagtaagctaatttcaaatgcctaattttacaacatctctttaaaacttga |
163 |
Q |
| |
|
|||| | ||||||| | | ||| |||||||| ||||| ||||||||| || |||||| |||| |
|
|
| T |
32267579 |
ttcactgttgaacactgggataagttcaaatgtctaatgttacaacatatccttaaaaattga |
32267641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 6 - 87
Target Start/End: Complemental strand, 38267643 - 38267562
Alignment:
| Q |
6 |
tcttcgagatcacatagagtgtttcatcatcaaccattgtatttgacaagtctaacacctccagttttggagcttcaaagtt |
87 |
Q |
| |
|
|||| ||||| ||||||||||| ||||||||||| |||||| || |||||| |||||||| || || ||| |||||||||| |
|
|
| T |
38267643 |
tctttgagattacatagagtgtgtcatcatcaactcttgtatgtgtcaagtccaacacctcaaggttgggaacttcaaagtt |
38267562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 6 - 86
Target Start/End: Original strand, 37937899 - 37937979
Alignment:
| Q |
6 |
tcttcgagatcacatagagtgtttcatcatcaaccattgtatttgacaagtctaacacctccagttttggagcttcaaagt |
86 |
Q |
| |
|
|||| ||||| ||||||||||||| |||||||| |||||| || |||||| |||||||| || || ||| ||||||||| |
|
|
| T |
37937899 |
tctttgagattacatagagtgtttgatcatcaattcttgtatgtgtcaagtccaacacctcaaggttgggaacttcaaagt |
37937979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 197 - 233
Target Start/End: Original strand, 37938094 - 37938130
Alignment:
| Q |
197 |
aaatcaagaagctgcagattggggaaaatggaagcaa |
233 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||| |
|
|
| T |
37938094 |
aaatcaagaaattgcagattggggaaaatggaagcaa |
37938130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0807 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: scaffold0807
Description:
Target: scaffold0807; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 1559 - 1388
Alignment:
| Q |
1 |
acaactcttcgagatcacatagagtgtttcatcatcaacca---ttgtatttgacaagtctaacacctccagttttggagcttcaaagttcattccaagt |
97 |
Q |
| |
|
|||| |||| ||||||||||||||||||||||||||| | | |||||||||||||||| |||||||| || || ||| || ||||||||||| ||| | |
|
|
| T |
1559 |
acaattctttgagatcacatagagtgtttcatcatcatcaacatttgtatttgacaagtccaacacctctagcttaggaactacaaagttcatttcaaat |
1460 |
T |
|
| Q |
98 |
agcttcagttttgaacagtaagctaatttcaaatgcctaattttacaacatctctttaaaacttgacaaata |
169 |
Q |
| |
|
|| | || |||||| | ||||| |||||||| ||||| ||| |||||||| ||||||||||||||||| |
|
|
| T |
1459 |
aggtccacagatgaacaccaggctaagttcaaatgtctaatcttataacatctccttaaaacttgacaaata |
1388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 39191 - 39236
Alignment:
| Q |
1 |
acaactcttcgagatcacatagagtgtttcatcatcaaccattgta |
46 |
Q |
| |
|
||||||||| ||||||||||| ||||||||||||| |||| ||||| |
|
|
| T |
39191 |
acaactctttgagatcacataaagtgtttcatcattaacctttgta |
39236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University