View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15294_high_6 (Length: 268)

Name: NF15294_high_6
Description: NF15294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15294_high_6
NF15294_high_6
[»] chr2 (8 HSPs)
chr2 (18-255)||(2787051-2787288)
chr2 (18-182)||(21797966-21798130)
chr2 (18-182)||(21803120-21803284)
chr2 (22-182)||(27737593-27737753)
chr2 (18-182)||(44801550-44801714)
chr2 (18-182)||(27635379-27635543)
chr2 (18-182)||(15010653-15010818)
chr2 (18-174)||(6068167-6068323)
[»] chr8 (2 HSPs)
chr8 (18-182)||(29515858-29516022)
chr8 (18-174)||(4168457-4168612)
[»] chr4 (2 HSPs)
chr4 (18-182)||(36183618-36183782)
chr4 (18-182)||(28378675-28378839)
[»] chr7 (1 HSPs)
chr7 (18-182)||(28393930-28394095)
[»] chr3 (2 HSPs)
chr3 (18-182)||(53127735-53127898)
chr3 (58-158)||(41119340-41119442)
[»] chr6 (1 HSPs)
chr6 (22-146)||(26472027-26472153)
[»] chr5 (1 HSPs)
chr5 (28-111)||(5958398-5958481)


Alignment Details
Target: chr2 (Bit Score: 230; Significance: 1e-127; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 18 - 255
Target Start/End: Complemental strand, 2787288 - 2787051
Alignment:
Q  18 gaacgatcgccacattcaagatgaacaataagatcaaatcgcggatccgtcacaagaataagatgctcttgataaggatctagatttggttcatccaaga 117  Q
    ||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2787288 gaacgatcgccacattcaagatgaacaataagatcgaatcgcagatccgtcacaagaataagatgctcttgataaggatctagatttggttcatccaaga 2787189  T
Q  118 acctagaagagcaattctaactctccctttaatcaaagatttaaaatatcaaattgtattaaccttttagagtacttaacaacattacatagaacccact 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2787188 acctagaagagcaattctaactctccctttaatcaaagatttaaaatatcaaattgtattaaccttttagagtacttaacaacattacatagaacccact 2787089  T
Q  218 cagattatgttgtgaagtactcaaatcatgcagtatgt 255  Q
    ||||||||||||||||||||||||||||||||||||||    
T  2787088 cagattatgttgtgaagtactcaaatcatgcagtatgt 2787051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 18 - 182
Target Start/End: Complemental strand, 21798130 - 21797966
Alignment:
Q  18 gaacgatcgccacattcaagatgaacaataagatcaaatcgcggatccgtcacaagaataagatgctcttgataaggatctagatttggttcatccaaga 117  Q
    |||||||||||||||||||||||||| |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||    
T  21798130 gaacgatcgccacattcaagatgaacgataagatcgaatcgcggatccgccacaagaataagatgctcttgataaggatctagaattggttcatccaaga 21798031  T
Q  118 acctagaagagcaattctaactctccctttaatcaaagatttaaaatatcaaattgtattaacct 182  Q
    ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||    
T  21798030 acctagaagagcaattctaactctcccttcaatcaaagattgaaaatatcaaattgtattaacct 21797966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 18 - 182
Target Start/End: Complemental strand, 21803284 - 21803120
Alignment:
Q  18 gaacgatcgccacattcaagatgaacaataagatcaaatcgcggatccgtcacaagaataagatgctcttgataaggatctagatttggttcatccaaga 117  Q
    |||||||||||||||||||||||||| |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||    
T  21803284 gaacgatcgccacattcaagatgaacgataagatcgaatcgcggatccgccacaagaataagatgctcttgataaggatctagaattggttcatccaaga 21803185  T
Q  118 acctagaagagcaattctaactctccctttaatcaaagatttaaaatatcaaattgtattaacct 182  Q
    ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||    
T  21803184 acctagaagagcaattctaactctcccttcaatcaaagattgaaaatatcaaattgtattaacct 21803120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 22 - 182
Target Start/End: Complemental strand, 27737753 - 27737593
Alignment:
Q  22 gatcgccacattcaagatgaacaataagatcaaatcgcggatccgtcacaagaataagatgctcttgataaggatctagatttggttcatccaagaacct 121  Q
    |||||||||||||||||||||| |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27737753 gatcgccacattcaagatgaacgataagatcgaatcgcggatccgccacaagaataagatgctcttgataaggatctagatttggttcatccaagaacct 27737654  T
Q  122 agaagagcaattctaactctccctttaatcaaagatttaaaatatcaaattgtattaacct 182  Q
    ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||    
T  27737653 agaagagcaattctaactctcccttcaatcaaagattgaaaatatcaaattgtattaacct 27737593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 18 - 182
Target Start/End: Original strand, 44801550 - 44801714
Alignment:
Q  18 gaacgatcgccacattcaagatgaacaataagatcaaatcgcggatccgtcacaagaataagatgctcttgataaggatctagatttggttcatccaaga 117  Q
    |||||||||||||||||||||||||| |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||    
T  44801550 gaacgatcgccacattcaagatgaacgataagatcgaatcgcggatccgccacaagaataagatgctcttgataaggatctagaattggttcatccaaga 44801649  T
Q  118 acctagaagagcaattctaactctccctttaatcaaagatttaaaatatcaaattgtattaacct 182  Q
    ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||    
T  44801650 acctagaagagcaattctaactctcccttcaatcaaagattgaaaatatcaaattgtattaacct 44801714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 18 - 182
Target Start/End: Original strand, 27635379 - 27635543
Alignment:
Q  18 gaacgatcgccacattcaagatgaacaataagatcaaatcgcggatccgtcacaagaataagatgctcttgataaggatctagatttggttcatccaaga 117  Q
    |||||||||||||||||||||||||| |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27635379 gaacgatcgccacattcaagatgaacgataagatcgaatcgcggatccgccacaagaataagatgctcttgataaggatctagatttggttcatccaaga 27635478  T
Q  118 acctagaagagcaattctaactctccctttaatcaaagatttaaaatatcaaattgtattaacct 182  Q
    |||||||| ||||||||||| |||||||| ||||||||||| |||||||||||||||| ||||||    
T  27635479 acctagaatagcaattctaaatctcccttcaatcaaagattgaaaatatcaaattgtactaacct 27635543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 18 - 182
Target Start/End: Original strand, 15010653 - 15010818
Alignment:
Q  18 gaacgatcgccacattcaagatgaacaataagatcaaatcgcggatccgtcacaagaataagatgctcttgataaggatctagatttggttcatccaaga 117  Q
    |||||||||||||||||||||||||| |||||||| ||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||    
T  15010653 gaacgatcgccacattcaagatgaactataagatcgaatcgcggatccactacaagaataagatgctcttgataaggatctagatttggttcatccaaga 15010752  T
Q  118 acctagaagagcaattctaactctccctttaatcaaagatt-taaaatatcaaattgtattaacct 182  Q
    ||||||||||||||||||||||||||||  |||||||||||  |||||||||||||||||||||||    
T  15010753 acctagaagagcaattctaactctccctccaatcaaagattgaaaaatatcaaattgtattaacct 15010818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 18 - 174
Target Start/End: Complemental strand, 6068323 - 6068167
Alignment:
Q  18 gaacgatcgccacattcaagatgaacaataagatcaaatcgcggatccgtcacaagaataagatgctcttgataaggatctagatttggttcatccaaga 117  Q
    |||| |||| ||||||||||| |||| |||||||  ||| || |||||| |||||||||| |||||||||||||| |||||| |||||||||||| || |    
T  6068323 gaacaatcgtcacattcaagaagaacgataagattgaattgcagatccgccacaagaatatgatgctcttgataaagatctaaatttggttcatcaaaca 6068224  T
Q  118 acctagaagagcaattctaactctcccttt-aatcaaagatttaaaatatcaaattgt 174  Q
    ||||||||||||||| ||||||||| |||| ||||||||| || ||||||||||||||    
T  6068223 acctagaagagcaatactaactctcgctttcaatcaaaga-ttgaaatatcaaattgt 6068167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 141; Significance: 5e-74; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 18 - 182
Target Start/End: Original strand, 29515858 - 29516022
Alignment:
Q  18 gaacgatcgccacattcaagatgaacaataagatcaaatcgcggatccgtcacaagaataagatgctcttgataaggatctagatttggttcatccaaga 117  Q
    |||||||||||||||||||||||||| |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||    
T  29515858 gaacgatcgccacattcaagatgaacgataagatcgaatcgcggatccgccacaagaataagatgctcttgataaggatctagaattggttcatccaaga 29515957  T
Q  118 acctagaagagcaattctaactctccctttaatcaaagatttaaaatatcaaattgtattaacct 182  Q
    ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||    
T  29515958 acctagaagagcaattctaactctcccttcaatcaaagattgaaaatatcaaattgtattaacct 29516022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 18 - 174
Target Start/End: Complemental strand, 4168612 - 4168457
Alignment:
Q  18 gaacgatcgccacattcaagatgaacaataagatcaaatcgcggatccgtcacaagaataagatgctcttgataaggatctagatttggttcatccaaga 117  Q
    ||||||| ||||||||||||||| || |||||||| |||| |||||  | ||||||||||| |||||||||||||||| ||||||||||||||||||| |    
T  4168612 gaacgattgccacattcaagatgtacgataagatcgaatcacggattagccacaagaataaaatgctcttgataaggagctagatttggttcatccaata 4168513  T
Q  118 acctagaagagcaattctaactctccctttaatcaaagatttaaaatatcaaattgt 174  Q
    |||||||| ||||||||||||| |  ||| ||||||||| || ||||||||||||||    
T  4168512 acctagaatagcaattctaactttttcttcaatcaaaga-ttgaaatatcaaattgt 4168457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 133; Significance: 3e-69; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 18 - 182
Target Start/End: Complemental strand, 36183782 - 36183618
Alignment:
Q  18 gaacgatcgccacattcaagatgaacaataagatcaaatcgcggatccgtcacaagaataagatgctcttgataaggatctagatttggttcatccaaga 117  Q
    |||||||||||||||||||||||||| |||||||| |||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36183782 gaacgatcgccacattcaagatgaacgataagatcgaatcgtagatccgtcacaagaataagatgctcttgataaggatctagatttggttcatccaaga 36183683  T
Q  118 acctagaagagcaattctaactctccctttaatcaaagatttaaaatatcaaattgtattaacct 182  Q
    |||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||| ||||||    
T  36183682 acctagaatagcaattctaactctcccttcaatcaaagattgaaaatatcaaattgtactaacct 36183618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 18 - 182
Target Start/End: Original strand, 28378675 - 28378839
Alignment:
Q  18 gaacgatcgccacattcaagatgaacaataagatcaaatcgcggatccgtcacaagaataagatgctcttgataaggatctagatttggttcatccaaga 117  Q
    |||||||||||||||||||||||||| |||||||| |||| ||||||||  ||||||||||||||||||||| |||||||||||||||||||||||||||    
T  28378675 gaacgatcgccacattcaagatgaacgataagatcgaatcacggatccgcaacaagaataagatgctcttgaaaaggatctagatttggttcatccaaga 28378774  T
Q  118 acctagaagagcaattctaactctccctttaatcaaagatttaaaatatcaaattgtattaacct 182  Q
    |||||||||||||||||||||| |||||| ||||||||||| |||||||||||||||||||||||    
T  28378775 acctagaagagcaattctaactatcccttcaatcaaagattgaaaatatcaaattgtattaacct 28378839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 18 - 182
Target Start/End: Original strand, 28393930 - 28394095
Alignment:
Q  18 gaacgatcgccacattcaagatgaacaataagatcaaatcgcggatccgtcacaagaataagatgctcttgataaggatctagatttggttcatccaaga 117  Q
    ||||||||| |||||||||||||||  |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  28393930 gaacgatcgtcacattcaagatgaatgataagatcgaatcgcggatccgccacaagaataagatgctcttgataaggatctaggtttggttcatccaaga 28394029  T
Q  118 acctagaagagcaattctaactctccctttaatcaaagatt-taaaatatcaaattgtattaacct 182  Q
    |||||||||||||||| |||||||||||| |||||||||||  |||||||||||||||||||||||    
T  28394030 acctagaagagcaattttaactctcccttcaatcaaagattgaaaaatatcaaattgtattaacct 28394095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 117; Significance: 1e-59; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 18 - 182
Target Start/End: Complemental strand, 53127898 - 53127735
Alignment:
Q  18 gaacgatcgccacattcaagatgaacaataagatcaaatcgcggatccgtcacaagaataagatgctcttgataaggatctagatttggttcatccaaga 117  Q
    |||||||||||||||||||||||||| |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| | ||||||||| |    
T  53127898 gaacgatcgccacattcaagatgaacgataagatcgaatcgcggatccgccacaagaataagatgctcttgataaggatctagattcgattcatccaaca 53127799  T
Q  118 acctagaagagcaattctaactctccctttaatcaaagatttaaaatatcaaattgtattaacct 182  Q
    |||||||||||||||||||||||||  || ||||||||| || ||||||||||||||||||||||    
T  53127798 acctagaagagcaattctaactctctgttcaatcaaaga-ttgaaatatcaaattgtattaacct 53127735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 58 - 158
Target Start/End: Complemental strand, 41119442 - 41119340
Alignment:
Q  58 gcggatccgtcacaagaataag-atgctcttgataaggatctagatttggttcatcc-aagaacctagaagagcaattctaactctccctttaatcaaag 155  Q
    ||||||||| |||||||||| | ||| ||| |||||||||||||| ||||||||||| || |||||||| ||||||  ||| ||||| ||| |||| |||    
T  41119442 gcggatccgccacaagaatacggatgttctagataaggatctagaattggttcatccaaataacctagaggagcaaaactagctctcacttcaatcgaag 41119343  T
Q  156 att 158  Q
    |||    
T  41119342 att 41119340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 72; Significance: 8e-33; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 22 - 146
Target Start/End: Complemental strand, 26472153 - 26472027
Alignment:
Q  22 gatcgccacattcaagatgaacaataagatcaaatcgcggatccgtcacaagaata--agatgctcttgataaggatctagatttggttcatccaagaac 119  Q
    ||||| ||||||||||||||||||||||||| |||||  |||||| ||||||||||  |||||||||||||| |||| |||||||||||||||||||||     
T  26472153 gatcgtcacattcaagatgaacaataagatcgaatcgtagatccgccacaagaatataagatgctcttgatacggatttagatttggttcatccaagaat 26472054  T
Q  120 ctagaagagcaattctaactctccctt 146  Q
    |||| |||||||||| |||||| ||||    
T  26472053 ctagtagagcaattccaactctacctt 26472027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 28 - 111
Target Start/End: Complemental strand, 5958481 - 5958398
Alignment:
Q  28 cacattcaagatgaacaataagatcaaatcgcggatccgtcacaagaataagatgctcttgataaggatctagatttggttcat 111  Q
    |||||||||||||||| ||||||||||||| |||| ||||||||| ||||||||| |||| |||||||| ||||||||||||||    
T  5958481 cacattcaagatgaacgataagatcaaatcacggacccgtcacaaaaataagatgttctttataaggatttagatttggttcat 5958398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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