View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15294_high_7 (Length: 266)

Name: NF15294_high_7
Description: NF15294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15294_high_7
NF15294_high_7
[»] scaffold0110 (1 HSPs)
scaffold0110 (20-247)||(3983-4216)
[»] chr6 (4 HSPs)
chr6 (25-75)||(4247221-4247271)
chr6 (26-63)||(7268048-7268085)
chr6 (86-116)||(21617315-21617345)
chr6 (24-68)||(33818096-33818140)
[»] chr7 (4 HSPs)
chr7 (21-61)||(753355-753395)
chr7 (22-61)||(28691965-28692004)
chr7 (25-62)||(47303646-47303683)
chr7 (19-63)||(5630064-5630108)
[»] chr5 (4 HSPs)
chr5 (23-75)||(33961584-33961636)
chr5 (22-68)||(1084235-1084281)
chr5 (22-75)||(18543334-18543387)
chr5 (22-75)||(20982272-20982325)
[»] chr3 (7 HSPs)
chr3 (199-247)||(22667480-22667528)
chr3 (199-247)||(22724119-22724167)
chr3 (21-69)||(4534484-4534532)
chr3 (23-55)||(24235825-24235857)
chr3 (199-235)||(30573859-30573895)
chr3 (22-62)||(37308215-37308255)
chr3 (199-247)||(43115133-43115181)
[»] chr2 (4 HSPs)
chr2 (23-63)||(9477860-9477900)
chr2 (196-247)||(6547251-6547302)
chr2 (22-71)||(29316916-29316965)
chr2 (199-235)||(40145541-40145577)
[»] chr4 (3 HSPs)
chr4 (18-61)||(8422988-8423031)
chr4 (22-54)||(14011129-14011161)
chr4 (199-247)||(18628498-18628546)
[»] chr8 (5 HSPs)
chr8 (19-61)||(27754584-27754626)
chr8 (22-75)||(31875696-31875749)
chr8 (76-137)||(39591199-39591260)
chr8 (77-113)||(7667934-7667970)
chr8 (23-75)||(11119136-11119188)
[»] chr1 (2 HSPs)
chr1 (196-242)||(4033959-4034005)
chr1 (23-68)||(30237890-30237935)


Alignment Details
Target: scaffold0110 (Bit Score: 183; Significance: 5e-99; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 20 - 247
Target Start/End: Original strand, 3983 - 4216
Alignment:
Q  20 ctctgtttggataaacaacttaatgaagtgtttatagtataagtacttaccatatactccggaatgaaatataagcaaaaatattagttaaaaagttgac 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||    
T  3983 ctctgtttggataaacaacttaatgaagtgtttatagtataagtacttaccatatactccggaatgaaatataagcaaaaatggtagttaaaaagttgac 4082  T
Q  120 gtaccccgactaaattttaaactacggtttttgcttatatttcattccagagtaagtgtttcatgggctagcttat------ttgtctactgacataaac 213  Q
    ||||| ||||||||||||||||| || ||||||||||||||||||||| |||||||||||||||||||||||||||      |||||||||||||||| |    
T  4083 gtacctcgactaaattttaaactccgttttttgcttatatttcattccggagtaagtgtttcatgggctagcttatttgagcttgtctactgacataagc 4182  T
Q  214 acttgtgagcttgtttgtgagagtttatggaaac 247  Q
    ||||||||||||||||||||||||||||||||||    
T  4183 acttgtgagcttgtttgtgagagtttatggaaac 4216  T

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Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 25 - 75
Target Start/End: Complemental strand, 4247271 - 4247221
Alignment:
Q  25 tttggataaacaacttaatgaagtgtttatagtataagtacttaccatata 75  Q
    ||||||||||||||||||| ||||| |||||| ||||||||||| ||||||    
T  4247271 tttggataaacaacttaattaagtgcttatagcataagtacttatcatata 4247221  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 26 - 63
Target Start/End: Complemental strand, 7268085 - 7268048
Alignment:
Q  26 ttggataaacaacttaatgaagtgtttatagtataagt 63  Q
    |||||||||||||||||| |||||||||||||||||||    
T  7268085 ttggataaacaacttaattaagtgtttatagtataagt 7268048  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 116
Target Start/End: Original strand, 21617315 - 21617345
Alignment:
Q  86 aaatataagcaaaaatattagttaaaaagtt 116  Q
    |||||||||||||||||||||||||||||||    
T  21617315 aaatataagcaaaaatattagttaaaaagtt 21617345  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 68
Target Start/End: Complemental strand, 33818140 - 33818096
Alignment:
Q  24 gtttggataaacaacttaatgaagtgtttatagtataagtactta 68  Q
    ||||||||| |||||||||| |||||||||||| |||||| ||||    
T  33818140 gtttggatatacaacttaattaagtgtttatagcataagtgctta 33818096  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 61
Target Start/End: Complemental strand, 753395 - 753355
Alignment:
Q  21 tctgtttggataaacaacttaatgaagtgtttatagtataa 61  Q
    ||||||||||||||||||||||| |||||||||||| ||||    
T  753395 tctgtttggataaacaacttaattaagtgtttatagcataa 753355  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 22 - 61
Target Start/End: Complemental strand, 28692004 - 28691965
Alignment:
Q  22 ctgtttggataaacaacttaatgaagtgtttatagtataa 61  Q
    |||||||||||||||||||||| ||||||||||| |||||    
T  28692004 ctgtttggataaacaacttaattaagtgtttataatataa 28691965  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 62
Target Start/End: Complemental strand, 47303683 - 47303646
Alignment:
Q  25 tttggataaacaacttaatgaagtgtttatagtataag 62  Q
    |||||||||||||||||||  |||||||||||||||||    
T  47303683 tttggataaacaacttaattgagtgtttatagtataag 47303646  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 63
Target Start/End: Complemental strand, 5630108 - 5630064
Alignment:
Q  19 gctctgtttggataaacaacttaatgaagtgtttatagtataagt 63  Q
    ||||||||||||||||||||||||| ||||  |||||| ||||||    
T  5630108 gctctgtttggataaacaacttaattaagtccttatagaataagt 5630064  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 75
Target Start/End: Original strand, 33961584 - 33961636
Alignment:
Q  23 tgtttggataaacaacttaatgaagtgtttatagtataagtacttaccatata 75  Q
    |||||||| |||| ||||||| |||||||||||||||||| ||||| ||||||    
T  33961584 tgtttggagaaacgacttaattaagtgtttatagtataagcacttatcatata 33961636  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 68
Target Start/End: Complemental strand, 1084281 - 1084235
Alignment:
Q  22 ctgtttggataaacaacttaatgaagtgtttatagtataagtactta 68  Q
    |||||||||||||||||||||| ||||||||||  ||||||| ||||    
T  1084281 ctgtttggataaacaacttaattaagtgtttatcatataagtgctta 1084235  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 22 - 75
Target Start/End: Complemental strand, 18543387 - 18543334
Alignment:
Q  22 ctgtttggataaacaacttaatgaagtgtttatagtataagtacttaccatata 75  Q
    |||||||||||||||||||||| | |   |||||||||||||||||| ||||||    
T  18543387 ctgtttggataaacaacttaataacgcccttatagtataagtacttatcatata 18543334  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 22 - 75
Target Start/End: Complemental strand, 20982325 - 20982272
Alignment:
Q  22 ctgtttggataaacaacttaatgaagtgtttatagtataagtacttaccatata 75  Q
    ||||||||||||||||||| || ||||| |||||| |||||| |||| ||||||    
T  20982325 ctgtttggataaacaacttcattaagtgcttatagcataagtgcttatcatata 20982272  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 199 - 247
Target Start/End: Complemental strand, 22667528 - 22667480
Alignment:
Q  199 tctactgacataaacacttgtgagcttgtttgtgagagtttatggaaac 247  Q
    ||||||||||||| ||||||||||  |||||| ||||||||||||||||    
T  22667528 tctactgacataagcacttgtgagactgtttgagagagtttatggaaac 22667480  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 199 - 247
Target Start/End: Complemental strand, 22724167 - 22724119
Alignment:
Q  199 tctactgacataaacacttgtgagcttgtttgtgagagtttatggaaac 247  Q
    ||||||||||||| ||||||||||  |||||| ||||||||||||||||    
T  22724167 tctactgacataagcacttgtgagactgtttgagagagtttatggaaac 22724119  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 69
Target Start/End: Complemental strand, 4534532 - 4534484
Alignment:
Q  21 tctgtttggataaacaacttaatgaagtgtttatagtataagtacttac 69  Q
    ||||||||||||||||||||||| |||   ||||||||||||| |||||    
T  4534532 tctgtttggataaacaacttaattaagcacttatagtataagtgcttac 4534484  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 55
Target Start/End: Complemental strand, 24235857 - 24235825
Alignment:
Q  23 tgtttggataaacaacttaatgaagtgtttata 55  Q
    ||||||||||||||||||||| |||||||||||    
T  24235857 tgtttggataaacaacttaattaagtgtttata 24235825  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 235
Target Start/End: Original strand, 30573859 - 30573895
Alignment:
Q  199 tctactgacataaacacttgtgagcttgtttgtgaga 235  Q
    ||||||||||||| |||||||||| ||||||||||||    
T  30573859 tctactgacataagcacttgtgagtttgtttgtgaga 30573895  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 62
Target Start/End: Complemental strand, 37308255 - 37308215
Alignment:
Q  22 ctgtttggataaacaacttaatgaagtgtttatagtataag 62  Q
    |||||||||||||||||||||| ||||| |||||| |||||    
T  37308255 ctgtttggataaacaacttaattaagtgcttatagcataag 37308215  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 247
Target Start/End: Complemental strand, 43115181 - 43115133
Alignment:
Q  199 tctactgacataaacacttgtgagcttgtttgtgagagtttatggaaac 247  Q
    |||| |||||||| |||||||||| |||||||  |||||||||||||||    
T  43115181 tctattgacataatcacttgtgagattgtttggaagagtttatggaaac 43115133  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 63
Target Start/End: Original strand, 9477860 - 9477900
Alignment:
Q  23 tgtttggataaacaacttaatgaagtgtttatagtataagt 63  Q
    ||||||||||||||||||||| |||||||||||| ||||||    
T  9477860 tgtttggataaacaacttaattaagtgtttatagcataagt 9477900  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 196 - 247
Target Start/End: Complemental strand, 6547302 - 6547251
Alignment:
Q  196 ttgtctactgacataaacacttgtgagcttgtttgtgagagtttatggaaac 247  Q
    ||||| || ||||||| ||||||||||  |||||||||||||||||||||||    
T  6547302 ttgtcgaccgacataagcacttgtgagactgtttgtgagagtttatggaaac 6547251  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 22 - 71
Target Start/End: Complemental strand, 29316965 - 29316916
Alignment:
Q  22 ctgtttggataaacaacttaatgaagtgtttatagtataagtacttacca 71  Q
    |||||||||||||||||||||| ||||||||| || ||||| | ||||||    
T  29316965 ctgtttggataaacaacttaattaagtgtttacagcataaggaattacca 29316916  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 235
Target Start/End: Complemental strand, 40145577 - 40145541
Alignment:
Q  199 tctactgacataaacacttgtgagcttgtttgtgaga 235  Q
    ||||||||||||||||||| |||||||||||| ||||    
T  40145577 tctactgacataaacacttatgagcttgtttgagaga 40145541  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 61
Target Start/End: Complemental strand, 8423031 - 8422988
Alignment:
Q  18 agctctgtttggataaacaacttaatgaagtgtttatagtataa 61  Q
    ||||| |||||||||||||||||||| |||||||||||| ||||    
T  8423031 agctcagtttggataaacaacttaattaagtgtttatagcataa 8422988  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 54
Target Start/End: Original strand, 14011129 - 14011161
Alignment:
Q  22 ctgtttggataaacaacttaatgaagtgtttat 54  Q
    |||||||||||||||||||||| ||||||||||    
T  14011129 ctgtttggataaacaacttaattaagtgtttat 14011161  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 247
Target Start/End: Original strand, 18628498 - 18628546
Alignment:
Q  199 tctactgacataaacacttgtgagcttgtttgtgagagtttatggaaac 247  Q
    ||||||||||||||||||||||||  |||||| ||||| ||||| ||||    
T  18628498 tctactgacataaacacttgtgagactgtttgggagagcttatgaaaac 18628546  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 61
Target Start/End: Complemental strand, 27754626 - 27754584
Alignment:
Q  19 gctctgtttggataaacaacttaatgaagtgtttatagtataa 61  Q
    ||||||||||| ||| ||||||||| |||||||||||||||||    
T  27754626 gctctgtttgggtaagcaacttaattaagtgtttatagtataa 27754584  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 22 - 75
Target Start/End: Complemental strand, 31875749 - 31875696
Alignment:
Q  22 ctgtttggataaacaacttaatgaagtgtttatagtataagtacttaccatata 75  Q
    ||||||||||| |||||||||||||| |||||||| |||||  |||| ||||||    
T  31875749 ctgtttggatagacaacttaatgaagcgtttatagcataagcgcttatcatata 31875696  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 76 - 137
Target Start/End: Original strand, 39591199 - 39591260
Alignment:
Q  76 ctccggaatgaaatataagcaaaaatattagttaaaaagttgacgtaccccgactaaatttt 137  Q
    |||||||||||||||||||||||||||  |||  ||||||||| ||| |  |||||||||||    
T  39591199 ctccggaatgaaatataagcaaaaataacagtcgaaaagttgatgtatctggactaaatttt 39591260  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 77 - 113
Target Start/End: Original strand, 7667934 - 7667970
Alignment:
Q  77 tccggaatgaaatataagcaaaaatattagttaaaaa 113  Q
    |||||| | ||||||||||||||||||||||||||||    
T  7667934 tccggattaaaatataagcaaaaatattagttaaaaa 7667970  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 75
Target Start/End: Complemental strand, 11119188 - 11119136
Alignment:
Q  23 tgtttggataaacaacttaatgaagtgtttatagtataagtacttaccatata 75  Q
    |||||||||||||||||| || |||||||||||| |||| ||| || ||||||    
T  11119188 tgtttggataaacaacttgattaagtgtttatagcataactacatatcatata 11119136  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 242
Target Start/End: Original strand, 4033959 - 4034005
Alignment:
Q  196 ttgtctactgacataaacacttgtgagcttgtttgtgagagtttatg 242  Q
    |||||||||| |||||||||||||||| ||||||| ||||| |||||    
T  4033959 ttgtctactggcataaacacttgtgagattgtttgagagagcttatg 4034005  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 23 - 68
Target Start/End: Complemental strand, 30237935 - 30237890
Alignment:
Q  23 tgtttggataaacaacttaatgaagtgtttatagtataagtactta 68  Q
    ||||||||||||||||||||| |||||| ||||| ||||| |||||    
T  30237935 tgtttggataaacaacttaattaagtgtctatagcataagcactta 30237890  T

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