View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15294_low_1 (Length: 472)
Name: NF15294_low_1
Description: NF15294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15294_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 63 - 464
Target Start/End: Original strand, 14017319 - 14017722
Alignment:
| Q |
63 |
cattcttaccattatttaaatttttcaccgt--actctttgttaaaatgcaacggcaatctgaaaccatggttaaatataatgaatgatcaaagggatag |
160 |
Q |
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| T |
14017319 |
cattcttactattctttaaatttttgaccgtgtactctttgttaaaatgcaacggcaatctgaaaccatggttaaataaaatgaatgatcaaagggatag |
14017418 |
T |
|
| Q |
161 |
acaaaagccgtcaagtcatgaacatgttaacacatataggaagggatgggatacttgtatgtaggccaattatatctgacttatcacagggtcacagcct |
260 |
Q |
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| T |
14017419 |
acaaaagccgtcaagtcatgaacatgttaacacatataggaagggatgggatacttgtatgtaggccaattatatctgacttatcacagggtcacagcct |
14017518 |
T |
|
| Q |
261 |
aaacttagcaccaagcaacaaacaagggttccattataatgttatatgtgtggaccacaagatggatcatgaaacacacagctttatctgatgctgaaaa |
360 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14017519 |
aaacttagcaccaagcaacaaacaagggttccattataatgttatatgtgtggaccacaagatggatcatgaaacacacagctttatctgatgctgaaaa |
14017618 |
T |
|
| Q |
361 |
ccccccaaaacaagcaaagcatcttatacgtgtattggtaatgggcaaggtttggactacttaacaagcaagctgtctacaacaaaagtatatcctatgc |
460 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
14017619 |
ccccccaaaacaagcaaagcatcttatacgtgtattggtaatgggcaaggtttggactacttaacaagcaagctgtctacaacaaaagtatatcctgtgc |
14017718 |
T |
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| Q |
461 |
tact |
464 |
Q |
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|||| |
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| T |
14017719 |
tact |
14017722 |
T |
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