View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15294_low_11 (Length: 245)
Name: NF15294_low_11
Description: NF15294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15294_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 231; Significance: 1e-128; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 231; E-Value: 1e-128
Query Start/End: Original strand, 2 - 240
Target Start/End: Complemental strand, 11847388 - 11847150
Alignment:
| Q |
2 |
aatatgaagatatatggcagatacttatttattaaaccagacaaacttgtcatgagaaatagtttttaaggacaaaaacctgattaacagcttcgccaaa |
101 |
Q |
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| T |
11847388 |
aatatgaagatatatggcagatgcttatttattaaaccagacaaacttgtcatgagaaatagtttttaaggacaaaaacctgattaacagcttcgccaaa |
11847289 |
T |
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| Q |
102 |
agccacaaatgcaaattctcctccaggagcaagaagaagcccaactctgatggcggatatgattgaaataccgaaaattgtgccaatcaaagcaaccaag |
201 |
Q |
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| T |
11847288 |
agccacaaatgcaaattctcctccaggagcaagaagaagcccaactctgatggcggatatgattgaaataccgaaaattttgccaatcaaagcaaccaag |
11847189 |
T |
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| Q |
202 |
agtgtcttgccacatatcaagagtcccaatgtccctatg |
240 |
Q |
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| T |
11847188 |
agtgtcttgccacatatcaagagtcccaatgtccctatg |
11847150 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 73 - 236
Target Start/End: Original strand, 28908753 - 28908916
Alignment:
| Q |
73 |
acaaaaacctgattaacagcttcgccaaaagccacaaatgcaaattctcctccaggagcaagaagaagcccaactctgatggcggatatgattgaaatac |
172 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||| |||| | || || |||| ||||| | |
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| T |
28908753 |
acaaaaacctgattaacagcttctccaaaagccacaaatgcaaattctccaccaggagcaagaagaagtccagctcttaaagcagaaatgacggaaatcc |
28908852 |
T |
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| Q |
173 |
cgaaaattgtgccaatcaaagcaaccaagagtgtcttgccacatatcaagagtcccaatgtccc |
236 |
Q |
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| T |
28908853 |
caaagattctacccatcaaagaaactaagagagtcttgccgcatattaagagtgccaatgtccc |
28908916 |
T |
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