View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15294_low_13 (Length: 236)
Name: NF15294_low_13
Description: NF15294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15294_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 136; Significance: 4e-71; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 45389571 - 45389718
Alignment:
| Q |
1 |
aattttttgttttgaaattaattgttgatcacacaattattttgaaataaaaaacaaaatagcaattcccacttcaacagaaagtataccaatcttacaa |
100 |
Q |
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| T |
45389571 |
aattttttgttttgaaattaattattgatcacgcaattattttgaaataaaaaacaaaatagcaattcccacttcaacagaaagtataccaatcttacaa |
45389670 |
T |
|
| Q |
101 |
aattgaaaattatatggtccatatgtagagtatactctaagttttgta |
148 |
Q |
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| T |
45389671 |
aattgaaaattctatggtccatatgtagagtatactctaagttttgta |
45389718 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 31890734 - 31890592
Alignment:
| Q |
1 |
aattttttgttttgaaattaattgttgatcacacaattattttgaaataaaaaacaaaatagcaattcccacttcaacagaaagtataccaatcttacaa |
100 |
Q |
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| T |
31890734 |
aattttttgttttgaaattaattgttcataactcaattattttgaaataaaaaataaaatagaaattcccacttcaacaaaaactatagaaattttacaa |
31890635 |
T |
|
| Q |
101 |
aattgaaaattatatggtccatatgtagagtatactctaagtt |
143 |
Q |
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| T |
31890634 |
aactggaaattctaaggtccatatgtagagtatactcaaagtt |
31890592 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 146 - 221
Target Start/End: Original strand, 45389786 - 45389862
Alignment:
| Q |
146 |
gtacaatctttgatgtt-ctcaaatttgcaatttcacatgacgctgcaagcatttgggttctcatcactgaacattt |
221 |
Q |
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| T |
45389786 |
gtacaacctttgatgtttctcaaatttgcaatttcacatgacgctgcaagcatttgggttctcatcactgaacattt |
45389862 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 177 - 221
Target Start/End: Original strand, 45385772 - 45385816
Alignment:
| Q |
177 |
ttcacatgacgctgcaagcatttgggttctcatcactgaacattt |
221 |
Q |
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| T |
45385772 |
ttcacatgacacagcaagcatttgggttctcatcactgaacattt |
45385816 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 41611174 - 41611316
Alignment:
| Q |
1 |
aattttttgttttgaaattaattgttgatcacacaattattttgaaataaaaaacaaaatagcaattcccacttcaacagaaagtataccaatcttacaa |
100 |
Q |
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|||||||||||||||||||||||||| || || ||||||||| |||||||||||||||||||||||||||||||||||| ||| |||| |||||||||| |
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| T |
41611174 |
aattttttgttttgaaattaattgttcataactcaattatttagaaataaaaaacaaaatagcaattcccacttcaacataaaccatacaaatcttacaa |
41611273 |
T |
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| Q |
101 |
aattgaaaattatatggtccatatgtagagtatactctaagtt |
143 |
Q |
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| T |
41611274 |
aagtgaaaattctaaggtccatctgtagagtatattctaagtt |
41611316 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 88; Significance: 2e-42; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 15601803 - 15601926
Alignment:
| Q |
1 |
aattttttgttttgaaattaattgttgatcacacaattattttgaaataaaaaacaaaatagcaattcccacttcaacagaaagtataccaatcttacaa |
100 |
Q |
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|||||||||||||||||||||||||| | || |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
15601803 |
aattttttgttttgaaattaattgttcgtaactcaattagtttgaaataaaaaacaaaatagcaattcccacttcaacagaaagtatacaaatcttacaa |
15601902 |
T |
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| Q |
101 |
aattgaaaattatatggtccatat |
124 |
Q |
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| T |
15601903 |
aactgaaaattctaaggtccatat |
15601926 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 5 - 143
Target Start/End: Original strand, 10970541 - 10970679
Alignment:
| Q |
5 |
ttttgttttgaaattaattgttgatcacacaattattttgaaataaaaaacaaaatagcaattcccacttcaacagaaagtataccaatcttacaaaatt |
104 |
Q |
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|||||||||||| ||||||||| || || |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | |||||||||| | |
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| T |
10970541 |
ttttgttttgaatttaattgttcataactcaattattttgaaataaaaaacaaaatagcaattcccagttcaacagaaagtatacaagtcttacaaaact |
10970640 |
T |
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| Q |
105 |
gaaaattatatggtccatatgtagagtatactctaagtt |
143 |
Q |
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||||||| ||||||| || | |||||||||||||||| |
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| T |
10970641 |
gaaaattttatggtctatcagcggagtatactctaagtt |
10970679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 15633115 - 15633238
Alignment:
| Q |
1 |
aattttttgttttgaaattaattgttgatcacacaattattttgaaataaaaaacaaaatagcaattcccacttcaacagaaagtataccaatcttacaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||| || || ||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
15633115 |
aattttttgttttgaaattaattgttcgcaactcagttagtttgaaataaaaaacaaaatagcaattcccacttcaacagaaagtataaaaatcttacaa |
15633214 |
T |
|
| Q |
101 |
aattgaaaattatatggtccatat |
124 |
Q |
| |
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|| |||||||| || ||||||||| |
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| T |
15633215 |
aactgaaaattctaaggtccatat |
15633238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 91 - 143
Target Start/End: Complemental strand, 32449266 - 32449214
Alignment:
| Q |
91 |
aatcttacaaaattgaaaattatatggtccatatgtagagtatactctaagtt |
143 |
Q |
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||||||||||||||||||||| |||||||||||||||||| ||||||||| |
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| T |
32449266 |
aatcttacaaaattgaaaattcctaggtccatatgtagagtatgctctaagtt |
32449214 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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