View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15294_low_2 (Length: 448)

Name: NF15294_low_2
Description: NF15294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15294_low_2
NF15294_low_2
[»] scaffold0110 (1 HSPs)
scaffold0110 (10-429)||(3791-4216)
[»] chr6 (4 HSPs)
chr6 (207-257)||(4247221-4247271)
chr6 (208-245)||(7268048-7268085)
chr6 (268-298)||(21617315-21617345)
chr6 (206-250)||(33818096-33818140)
[»] chr7 (4 HSPs)
chr7 (203-243)||(753355-753395)
chr7 (204-243)||(28691965-28692004)
chr7 (207-244)||(47303646-47303683)
chr7 (200-236)||(46091487-46091523)
[»] chr5 (4 HSPs)
chr5 (205-257)||(33961584-33961636)
chr5 (204-250)||(1084235-1084281)
chr5 (204-257)||(18543334-18543387)
chr5 (204-257)||(20982272-20982325)
[»] chr3 (7 HSPs)
chr3 (381-429)||(22667480-22667528)
chr3 (381-429)||(22724119-22724167)
chr3 (203-251)||(4534484-4534532)
chr3 (205-237)||(24235825-24235857)
chr3 (381-417)||(30573859-30573895)
chr3 (204-244)||(37308215-37308255)
chr3 (381-429)||(43115133-43115181)
[»] chr2 (4 HSPs)
chr2 (205-245)||(9477860-9477900)
chr2 (378-429)||(6547251-6547302)
chr2 (204-253)||(29316916-29316965)
chr2 (381-417)||(40145541-40145577)
[»] chr1 (2 HSPs)
chr1 (378-424)||(4033959-4034005)
chr1 (205-250)||(30237890-30237935)
[»] chr8 (5 HSPs)
chr8 (202-243)||(27754584-27754625)
chr8 (204-257)||(31875696-31875749)
chr8 (258-319)||(39591199-39591260)
chr8 (259-295)||(7667934-7667970)
chr8 (205-257)||(11119136-11119188)
[»] chr4 (3 HSPs)
chr4 (206-243)||(8422988-8423025)
chr4 (204-236)||(14011129-14011161)
chr4 (381-429)||(18628498-18628546)


Alignment Details
Target: scaffold0110 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 10 - 429
Target Start/End: Original strand, 3791 - 4216
Alignment:
Q  10 agaagaaaaatggtaatggatttcaaggtcttggtggatgttctaagtgcttgaatagtctctatttggtgagttttccttctacaaaaattataatttt 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3791 agaagaaaaatggtaatggatttcaaggtcttggtggatgttctaagtgcttgaatagtctctatttggtgagttttccttctacaaaaattataatttt 3890  T
Q  110 ttcttctatctatgatatgttttgatgttctttgtttggtattttgtgacattgaatttgatggatcttgttgaaaattgatgaagattggactctgttt 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3891 ttcttctatctatgatatgttttgatgttctttgtttggtattttgtgacattgaatttgatggatcttgttgaaaattgatgaagattggactctgttt 3990  T
Q  210 ggataaacaacttaatgaagtgtttatagtataagtacttaccatatactccggaatgaaatataagcaaaaatattagttaaaaagttgacgtaccccg 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||| ||    
T  3991 ggataaacaacttaatgaagtgtttatagtataagtacttaccatatactccggaatgaaatataagcaaaaatggtagttaaaaagttgacgtacctcg 4090  T
Q  310 actaaattttaaactacggtttttgcttatatttcattccagagtaagtgtttcatgggctagcttat------ttgtctactgacataaacacttgtga 403  Q
    ||||||||||||||| || ||||||||||||||||||||| |||||||||||||||||||||||||||      |||||||||||||||| |||||||||    
T  4091 actaaattttaaactccgttttttgcttatatttcattccggagtaagtgtttcatgggctagcttatttgagcttgtctactgacataagcacttgtga 4190  T
Q  404 gcttgtttgtgagagtttatggaaac 429  Q
    ||||||||||||||||||||||||||    
T  4191 gcttgtttgtgagagtttatggaaac 4216  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 207 - 257
Target Start/End: Complemental strand, 4247271 - 4247221
Alignment:
Q  207 tttggataaacaacttaatgaagtgtttatagtataagtacttaccatata 257  Q
    ||||||||||||||||||| ||||| |||||| ||||||||||| ||||||    
T  4247271 tttggataaacaacttaattaagtgcttatagcataagtacttatcatata 4247221  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 208 - 245
Target Start/End: Complemental strand, 7268085 - 7268048
Alignment:
Q  208 ttggataaacaacttaatgaagtgtttatagtataagt 245  Q
    |||||||||||||||||| |||||||||||||||||||    
T  7268085 ttggataaacaacttaattaagtgtttatagtataagt 7268048  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 268 - 298
Target Start/End: Original strand, 21617315 - 21617345
Alignment:
Q  268 aaatataagcaaaaatattagttaaaaagtt 298  Q
    |||||||||||||||||||||||||||||||    
T  21617315 aaatataagcaaaaatattagttaaaaagtt 21617345  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 206 - 250
Target Start/End: Complemental strand, 33818140 - 33818096
Alignment:
Q  206 gtttggataaacaacttaatgaagtgtttatagtataagtactta 250  Q
    ||||||||| |||||||||| |||||||||||| |||||| ||||    
T  33818140 gtttggatatacaacttaattaagtgtttatagcataagtgctta 33818096  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 203 - 243
Target Start/End: Complemental strand, 753395 - 753355
Alignment:
Q  203 tctgtttggataaacaacttaatgaagtgtttatagtataa 243  Q
    ||||||||||||||||||||||| |||||||||||| ||||    
T  753395 tctgtttggataaacaacttaattaagtgtttatagcataa 753355  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 204 - 243
Target Start/End: Complemental strand, 28692004 - 28691965
Alignment:
Q  204 ctgtttggataaacaacttaatgaagtgtttatagtataa 243  Q
    |||||||||||||||||||||| ||||||||||| |||||    
T  28692004 ctgtttggataaacaacttaattaagtgtttataatataa 28691965  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 207 - 244
Target Start/End: Complemental strand, 47303683 - 47303646
Alignment:
Q  207 tttggataaacaacttaatgaagtgtttatagtataag 244  Q
    |||||||||||||||||||  |||||||||||||||||    
T  47303683 tttggataaacaacttaattgagtgtttatagtataag 47303646  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 200 - 236
Target Start/End: Original strand, 46091487 - 46091523
Alignment:
Q  200 gactctgtttggataaacaacttaatgaagtgtttat 236  Q
    |||| ||||||||||||||| ||||||||||||||||    
T  46091487 gactatgtttggataaacaatttaatgaagtgtttat 46091523  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 205 - 257
Target Start/End: Original strand, 33961584 - 33961636
Alignment:
Q  205 tgtttggataaacaacttaatgaagtgtttatagtataagtacttaccatata 257  Q
    |||||||| |||| ||||||| |||||||||||||||||| ||||| ||||||    
T  33961584 tgtttggagaaacgacttaattaagtgtttatagtataagcacttatcatata 33961636  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 204 - 250
Target Start/End: Complemental strand, 1084281 - 1084235
Alignment:
Q  204 ctgtttggataaacaacttaatgaagtgtttatagtataagtactta 250  Q
    |||||||||||||||||||||| ||||||||||  ||||||| ||||    
T  1084281 ctgtttggataaacaacttaattaagtgtttatcatataagtgctta 1084235  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 204 - 257
Target Start/End: Complemental strand, 18543387 - 18543334
Alignment:
Q  204 ctgtttggataaacaacttaatgaagtgtttatagtataagtacttaccatata 257  Q
    |||||||||||||||||||||| | |   |||||||||||||||||| ||||||    
T  18543387 ctgtttggataaacaacttaataacgcccttatagtataagtacttatcatata 18543334  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 204 - 257
Target Start/End: Complemental strand, 20982325 - 20982272
Alignment:
Q  204 ctgtttggataaacaacttaatgaagtgtttatagtataagtacttaccatata 257  Q
    ||||||||||||||||||| || ||||| |||||| |||||| |||| ||||||    
T  20982325 ctgtttggataaacaacttcattaagtgcttatagcataagtgcttatcatata 20982272  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 381 - 429
Target Start/End: Complemental strand, 22667528 - 22667480
Alignment:
Q  381 tctactgacataaacacttgtgagcttgtttgtgagagtttatggaaac 429  Q
    ||||||||||||| ||||||||||  |||||| ||||||||||||||||    
T  22667528 tctactgacataagcacttgtgagactgtttgagagagtttatggaaac 22667480  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 381 - 429
Target Start/End: Complemental strand, 22724167 - 22724119
Alignment:
Q  381 tctactgacataaacacttgtgagcttgtttgtgagagtttatggaaac 429  Q
    ||||||||||||| ||||||||||  |||||| ||||||||||||||||    
T  22724167 tctactgacataagcacttgtgagactgtttgagagagtttatggaaac 22724119  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 203 - 251
Target Start/End: Complemental strand, 4534532 - 4534484
Alignment:
Q  203 tctgtttggataaacaacttaatgaagtgtttatagtataagtacttac 251  Q
    ||||||||||||||||||||||| |||   ||||||||||||| |||||    
T  4534532 tctgtttggataaacaacttaattaagcacttatagtataagtgcttac 4534484  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 205 - 237
Target Start/End: Complemental strand, 24235857 - 24235825
Alignment:
Q  205 tgtttggataaacaacttaatgaagtgtttata 237  Q
    ||||||||||||||||||||| |||||||||||    
T  24235857 tgtttggataaacaacttaattaagtgtttata 24235825  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 381 - 417
Target Start/End: Original strand, 30573859 - 30573895
Alignment:
Q  381 tctactgacataaacacttgtgagcttgtttgtgaga 417  Q
    ||||||||||||| |||||||||| ||||||||||||    
T  30573859 tctactgacataagcacttgtgagtttgtttgtgaga 30573895  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 204 - 244
Target Start/End: Complemental strand, 37308255 - 37308215
Alignment:
Q  204 ctgtttggataaacaacttaatgaagtgtttatagtataag 244  Q
    |||||||||||||||||||||| ||||| |||||| |||||    
T  37308255 ctgtttggataaacaacttaattaagtgcttatagcataag 37308215  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 381 - 429
Target Start/End: Complemental strand, 43115181 - 43115133
Alignment:
Q  381 tctactgacataaacacttgtgagcttgtttgtgagagtttatggaaac 429  Q
    |||| |||||||| |||||||||| |||||||  |||||||||||||||    
T  43115181 tctattgacataatcacttgtgagattgtttggaagagtttatggaaac 43115133  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 205 - 245
Target Start/End: Original strand, 9477860 - 9477900
Alignment:
Q  205 tgtttggataaacaacttaatgaagtgtttatagtataagt 245  Q
    ||||||||||||||||||||| |||||||||||| ||||||    
T  9477860 tgtttggataaacaacttaattaagtgtttatagcataagt 9477900  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 378 - 429
Target Start/End: Complemental strand, 6547302 - 6547251
Alignment:
Q  378 ttgtctactgacataaacacttgtgagcttgtttgtgagagtttatggaaac 429  Q
    ||||| || ||||||| ||||||||||  |||||||||||||||||||||||    
T  6547302 ttgtcgaccgacataagcacttgtgagactgtttgtgagagtttatggaaac 6547251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 204 - 253
Target Start/End: Complemental strand, 29316965 - 29316916
Alignment:
Q  204 ctgtttggataaacaacttaatgaagtgtttatagtataagtacttacca 253  Q
    |||||||||||||||||||||| ||||||||| || ||||| | ||||||    
T  29316965 ctgtttggataaacaacttaattaagtgtttacagcataaggaattacca 29316916  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 381 - 417
Target Start/End: Complemental strand, 40145577 - 40145541
Alignment:
Q  381 tctactgacataaacacttgtgagcttgtttgtgaga 417  Q
    ||||||||||||||||||| |||||||||||| ||||    
T  40145577 tctactgacataaacacttatgagcttgtttgagaga 40145541  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 378 - 424
Target Start/End: Original strand, 4033959 - 4034005
Alignment:
Q  378 ttgtctactgacataaacacttgtgagcttgtttgtgagagtttatg 424  Q
    |||||||||| |||||||||||||||| ||||||| ||||| |||||    
T  4033959 ttgtctactggcataaacacttgtgagattgtttgagagagcttatg 4034005  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 205 - 250
Target Start/End: Complemental strand, 30237935 - 30237890
Alignment:
Q  205 tgtttggataaacaacttaatgaagtgtttatagtataagtactta 250  Q
    ||||||||||||||||||||| |||||| ||||| ||||| |||||    
T  30237935 tgtttggataaacaacttaattaagtgtctatagcataagcactta 30237890  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 202 - 243
Target Start/End: Complemental strand, 27754625 - 27754584
Alignment:
Q  202 ctctgtttggataaacaacttaatgaagtgtttatagtataa 243  Q
    |||||||||| ||| ||||||||| |||||||||||||||||    
T  27754625 ctctgtttgggtaagcaacttaattaagtgtttatagtataa 27754584  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 204 - 257
Target Start/End: Complemental strand, 31875749 - 31875696
Alignment:
Q  204 ctgtttggataaacaacttaatgaagtgtttatagtataagtacttaccatata 257  Q
    ||||||||||| |||||||||||||| |||||||| |||||  |||| ||||||    
T  31875749 ctgtttggatagacaacttaatgaagcgtttatagcataagcgcttatcatata 31875696  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 258 - 319
Target Start/End: Original strand, 39591199 - 39591260
Alignment:
Q  258 ctccggaatgaaatataagcaaaaatattagttaaaaagttgacgtaccccgactaaatttt 319  Q
    |||||||||||||||||||||||||||  |||  ||||||||| ||| |  |||||||||||    
T  39591199 ctccggaatgaaatataagcaaaaataacagtcgaaaagttgatgtatctggactaaatttt 39591260  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 259 - 295
Target Start/End: Original strand, 7667934 - 7667970
Alignment:
Q  259 tccggaatgaaatataagcaaaaatattagttaaaaa 295  Q
    |||||| | ||||||||||||||||||||||||||||    
T  7667934 tccggattaaaatataagcaaaaatattagttaaaaa 7667970  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 205 - 257
Target Start/End: Complemental strand, 11119188 - 11119136
Alignment:
Q  205 tgtttggataaacaacttaatgaagtgtttatagtataagtacttaccatata 257  Q
    |||||||||||||||||| || |||||||||||| |||| ||| || ||||||    
T  11119188 tgtttggataaacaacttgattaagtgtttatagcataactacatatcatata 11119136  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 206 - 243
Target Start/End: Complemental strand, 8423025 - 8422988
Alignment:
Q  206 gtttggataaacaacttaatgaagtgtttatagtataa 243  Q
    |||||||||||||||||||| |||||||||||| ||||    
T  8423025 gtttggataaacaacttaattaagtgtttatagcataa 8422988  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 204 - 236
Target Start/End: Original strand, 14011129 - 14011161
Alignment:
Q  204 ctgtttggataaacaacttaatgaagtgtttat 236  Q
    |||||||||||||||||||||| ||||||||||    
T  14011129 ctgtttggataaacaacttaattaagtgtttat 14011161  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 381 - 429
Target Start/End: Original strand, 18628498 - 18628546
Alignment:
Q  381 tctactgacataaacacttgtgagcttgtttgtgagagtttatggaaac 429  Q
    ||||||||||||||||||||||||  |||||| ||||| ||||| ||||    
T  18628498 tctactgacataaacacttgtgagactgtttgggagagcttatgaaaac 18628546  T

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