View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15294_low_3 (Length: 432)
Name: NF15294_low_3
Description: NF15294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15294_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 10 - 416
Target Start/End: Original strand, 11847426 - 11847832
Alignment:
| Q |
10 |
aagaatatggttcttggtgttctttacttgagattattatagaggtttacgtctatgtcatctttccccgaaaatagactaataagtgaatacataattt |
109 |
Q |
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| T |
11847426 |
aagaatatgcttcttggtgttctttacttgagattattatagaggtttacgtctatgtcatctttccccgaaaatagactaataagtgaatacataattt |
11847525 |
T |
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| Q |
110 |
gttctttccggacatttcttgataaactaaggttgttttttcaaattgtgttattgttgtcttatcatttttggattcttttttatcttgggaaaaaggg |
209 |
Q |
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| T |
11847526 |
gttcttaccggacatttcttgataaactaaggttgttttttcaaattgtgttattgttgtcttatactttttggattcttttttatcttgggaaaaaggg |
11847625 |
T |
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| Q |
210 |
tggttgaaaaaaccagaaacatagatcaattttctgatttctgctaagaattttcttcctctttgaaatttaatacgctttnnnnnnngctaatatcttt |
309 |
Q |
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| T |
11847626 |
tggttgaaaaaaccagaaacatagatcaattttctgatttctgctaagaattttcttcctctttgaaatttaatacgctttaaaaaaaactaatatcttt |
11847725 |
T |
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| Q |
310 |
cctaattgacatttttgtagggtataatgtcttcccagttgtcctctttgctgttccttgttgtgggaatttcaatggcccttacgccatggctaggcga |
409 |
Q |
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| T |
11847726 |
cctaattgacatttttgtagggtataatgtcttcccagttgtcctctttgctgttccttgttgtgggaatttcaatggcccttacgccatggctaggcga |
11847825 |
T |
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| Q |
410 |
aggaggc |
416 |
Q |
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| T |
11847826 |
aggaggc |
11847832 |
T |
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Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 311 - 405
Target Start/End: Complemental strand, 28908461 - 28908367
Alignment:
| Q |
311 |
ctaattgacatttttgtagggtataatgtcttcccagttgtcctctttgctgttccttgttgtgggaatttcaatggcccttacgccatggctag |
405 |
Q |
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| T |
28908461 |
ctaattgacatttctgcagggcataatgtcttcccagctatcttctttgttgtttcttgttgtgggcatttcaatggccatcactccatggctag |
28908367 |
T |
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