View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15295_high_4 (Length: 377)
Name: NF15295_high_4
Description: NF15295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15295_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 157; Significance: 2e-83; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 27268088 - 27267872
Alignment:
| Q |
1 |
cacttacttgaaagaccaaaatcaaaccgtcacagttacattctctttagttttatgagaatccaatggcacaacttctagataaaactgttacggcttc |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| ||| |||| ||||||||||||||| |
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|
| T |
27268088 |
cacttacttgaaagaccaaaatcgaaccgtcacagttacattctatttagttttatgagaatccaatggcacaacctctggatataactgttacggcttc |
27267989 |
T |
|
| Q |
101 |
gtatgcattgacgaagacgccggcgaacttggagcgtgattgatggctccatgaaaccatttagatggcgaagttgttgaagatgacggcgaattcgcac |
200 |
Q |
| |
|
|| |||||||||||||||| || |||||||||||||||||| |||||||| |||||||||||||| |||||||||| ||||||||| ||||||||||| |
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|
| T |
27267988 |
ctacgcattgacgaagacgcaggtgaacttggagcgtgattggaggctccataaaaccatttagatgacgaagttgttaaagatgacgacgaattcgcac |
27267889 |
T |
|
| Q |
201 |
ctttcattgcttcaatc |
217 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
27267888 |
ctttcattgcttcaatc |
27267872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 6579396 - 6579612
Alignment:
| Q |
1 |
cacttacttgaaagaccaaaatcaaaccgtcacagttacattctctttagttttatgagaatccaatggcacaacttctagataaaactgttacggcttc |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||| | ||||||||||||||||||||||| |||||| |||||||| ||||||||||||||| |
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|
| T |
6579396 |
cacttacttgaaagaccaaaatcgaaccgtcacagttacattttatttagttttatgagaatccaatgacacaacctctagatataactgttacggcttc |
6579495 |
T |
|
| Q |
101 |
gtatgcattgacgaagacgccggcgaacttggagcgtgattgatggctccatgaaaccatttagatggcgaagttgttgaagatgacggcgaattcgcac |
200 |
Q |
| |
|
|| ||||||||||| |||| || |||||||||||||||||| | |||||| |||||||||||||| |||||||||| ||||||||||||||||||||| |
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|
| T |
6579496 |
ctacgcattgacgaatacgcaggtgaacttggagcgtgattggagactccataaaaccatttagatgacgaagttgttaaagatgacggcgaattcgcac |
6579595 |
T |
|
| Q |
201 |
ctttcattgcttcaatc |
217 |
Q |
| |
|
||||||| ||||||||| |
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|
| T |
6579596 |
ctttcatagcttcaatc |
6579612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 12664109 - 12664341
Alignment:
| Q |
1 |
cacttacttgaaagaccaaaatcaaaccgtcacagttacattctctttagttttatgagaatccaatggcacaacttctagataaaactgttacggcttc |
100 |
Q |
| |
|
||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| |
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|
| T |
12664109 |
cacttacttgaaataccaaaatcgaaccgtcacagttacattctctttagttttatgagaatccaatggcacaacctctagataaaactgttacggtttc |
12664208 |
T |
|
| Q |
101 |
gtatgcattgacgaagacgccggcgaacttggagcgtgattgatggctccatgaaaccatttagatggcgaagttgttgaagatgacggcgaattcgcac |
200 |
Q |
| |
|
|| |||| ||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||| |||||||| | ||||| ||| |
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|
| T |
12664209 |
ttacgcatcgacgaagacgccggcgaacttggagcgtgattggaggctccataaaaccatttagatgatgaagttgttaaagatgacaacaaattcacac |
12664308 |
T |
|
| Q |
201 |
ctttcattgcttcaatcaatctgaatcattttg |
233 |
Q |
| |
|
||||| ||||| |||| |||| |||||||||| |
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|
| T |
12664309 |
ctttcgctgcttaaatcgatctaaatcattttg |
12664341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 149; Significance: 1e-78; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 29711043 - 29711259
Alignment:
| Q |
1 |
cacttacttgaaagaccaaaatcaaaccgtcacagttacattctctttagttttatgagaatccaatggcacaacttctagataaaactgttacggcttc |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||| | |||||||||||||||||||||||| ||||| |||||||| ||||||||||||||| |
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|
| T |
29711043 |
cacttacttgaaagaccaaaatcgaaccgtcacagttacattttatttagttttatgagaatccaatggtacaacctctagatataactgttacggcttc |
29711142 |
T |
|
| Q |
101 |
gtatgcattgacgaagacgccggcgaacttggagcgtgattgatggctccatgaaaccatttagatggcgaagttgttgaagatgacggcgaattcgcac |
200 |
Q |
| |
|
|| |||||||||||||||| || |||||||||||||||||| |||||||| |||||||||||||| |||||||||| |||||||| |||||||||||| |
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|
| T |
29711143 |
ctacgcattgacgaagacgcaggtgaacttggagcgtgattggaggctccataaaaccatttagatgacgaagttgttaaagatgacagcgaattcgcac |
29711242 |
T |
|
| Q |
201 |
ctttcattgcttcaatc |
217 |
Q |
| |
|
||||||| ||||||||| |
|
|
| T |
29711243 |
ctttcatagcttcaatc |
29711259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 1690227 - 1690173
Alignment:
| Q |
1 |
cacttacttgaaagaccaaaatcaaaccgtcacagttacattctctttagtttta |
55 |
Q |
| |
|
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
1690227 |
cacttacttgaaaggccaaaatcgaaccgtcacagttacattctctttagtttta |
1690173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 69; Significance: 7e-31; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 9253166 - 9253070
Alignment:
| Q |
1 |
cacttacttgaaagaccaaaatcaaaccgtcacagttacattctctttagttttatgagaatccaatggcacaacttctagataaaactgttacggc |
97 |
Q |
| |
|
||||||||||| ||||| ||| ||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
9253166 |
cacttacttgatagaccgaaactgaaccgtcacagtttcattctctttagttttatgagaatccaatggtacaacttctagataaaactgttacggc |
9253070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 9317083 - 9317179
Alignment:
| Q |
1 |
cacttacttgaaagaccaaaatcaaaccgtcacagttacattctctttagttttatgagaatccaatggcacaacttctagataaaactgttacggc |
97 |
Q |
| |
|
||||||||||| ||||| ||| ||||||||||||| ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |
|
|
| T |
9317083 |
cacttacttgatagaccgaaacttaaccgtcacagtttcattctctttagttttatgagaatccaatagtacaacttctagataaaactgttacggc |
9317179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 32 - 205
Target Start/End: Original strand, 37276154 - 37276327
Alignment:
| Q |
32 |
acagttacattctctttagttttatgagaatccaatggcacaacttctagataaaactgttacggcttcgtatgcattgacgaagacgccggcgaacttg |
131 |
Q |
| |
|
|||||||||||||||||||| || ||||||||||| |||||| |||| |||||||||| | |||||| | ||| |||||| |||||||||||||| | |
|
|
| T |
37276154 |
acagttacattctctttagtcttttgagaatccaacggcacagtttctggataaaactgctgcggcttactccgcactgacgacgacgccggcgaactcg |
37276253 |
T |
|
| Q |
132 |
gagcgtgattgatggctccatgaaaccatttagatggcgaagttgttgaagatgacggcgaattcgcacctttc |
205 |
Q |
| |
|
|||| | |||| | | | |||||| |||||||| |||||||||||||||||| |||||||| |||||||| |
|
|
| T |
37276254 |
gagcatcattggaagtttcgtgaaactgtttagatgacgaagttgttgaagatgaaggcgaattgacacctttc |
37276327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 2 - 55
Target Start/End: Complemental strand, 16484248 - 16484195
Alignment:
| Q |
2 |
acttacttgaaagaccaaaatcaaaccgtcacagttacattctctttagtttta |
55 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
16484248 |
acttacttgaaagaccaaaatcgaaccgtcacagttacattctctttagtttta |
16484195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 2 - 55
Target Start/End: Original strand, 21818662 - 21818715
Alignment:
| Q |
2 |
acttacttgaaagaccaaaatcaaaccgtcacagttacattctctttagtttta |
55 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
21818662 |
acttacttgaaagaccaaaatcgaaccgtcacagttacattctctttagtttta |
21818715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 22008837 - 22008898
Alignment:
| Q |
1 |
cacttacttgaaagaccaaaatcaaaccgtcacagttacattctctttagttttatgagaat |
62 |
Q |
| |
|
||||||||| ||| ||| ||| ||||||| |||| ||||||||||||||||||||||||||| |
|
|
| T |
22008837 |
cacttacttcaaataccgaaaccaaaccgacacaattacattctctttagttttatgagaat |
22008898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 265 - 315
Target Start/End: Complemental strand, 42632266 - 42632216
Alignment:
| Q |
265 |
aaacttgttcaaccaatcaacctcatgaaacatgcaaatatcaataacaca |
315 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
42632266 |
aaacttgttcaaccaatcaacctgatgaaacatgcaaatatcaataacaca |
42632216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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