View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15295_high_6 (Length: 239)
Name: NF15295_high_6
Description: NF15295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15295_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 158; Significance: 3e-84; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 34287980 - 34287744
Alignment:
| Q |
1 |
ggaaatctagcatcactcattttaacatacattcagacacattattttttattggttaaaatttatgagttccactaaatttatgagacccacgtaactt |
100 |
Q |
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| T |
34287980 |
ggaaatctagcatcactcattttaacatacattcagacacattatcttttattggttaaaatttatgagttccactaaatttatgagacccacgtaactt |
34287881 |
T |
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| Q |
101 |
ggtgggacttatatgaatttcaagcaataaagaaagcgtgttggaa------------------tgggtg-tggtagagggtgtcttcttagcattattc |
181 |
Q |
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| T |
34287880 |
ggtggaacttatatgaatttcaagcaataaagaaagcgtgttggaagacaccctctaccaaatttgcgtgttggtagagggtgtcttcttagcattattc |
34287781 |
T |
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| Q |
182 |
atcgcatgtaatattcaatattcacattatatggttc |
218 |
Q |
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| T |
34287780 |
atcgcatgtaatattcaatattcacattatatggttc |
34287744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 28 - 184
Target Start/End: Complemental strand, 34297174 - 34297017
Alignment:
| Q |
28 |
tacattcagacacattattttttattggttaaaatt--tatgagttccactaaattta-tgagacccacgtaacttggtgggacttatatgaatttcaag |
124 |
Q |
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| T |
34297174 |
tacattcaaacacattctctttttttggttaaaattcatatgagttccagtaaatttaatggaacccgtgtaatttggtggaacttatatgaatttcaag |
34297075 |
T |
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| Q |
125 |
caataaagaaagcgtgttggaatgggtgtggtagagggtgtcttcttagcattattcatc |
184 |
Q |
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| T |
34297074 |
caataaag--agtgtgttgaaatgtgtgtagtagagcgtgtcttcttagcattattcatc |
34297017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 52 - 133
Target Start/End: Complemental strand, 34281547 - 34281463
Alignment:
| Q |
52 |
ttggttaaaatt--tatgagttccactaaattt--atgagacccacgtaacttggtgggacttatatgaatttcaagcaataaaga |
133 |
Q |
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| T |
34281547 |
ttggttaaaattcatataagtttcactaaatttttatgggaccgacg-aacttggtgggacatatatgaatttcaagcaataaaga |
34281463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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