View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15295_low_2 (Length: 488)
Name: NF15295_low_2
Description: NF15295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15295_low_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 413; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 11 - 477
Target Start/End: Complemental strand, 1369098 - 1368630
Alignment:
| Q |
11 |
atcatcatccttaaatttcacccc-tttcattcttgcaatattgacccctaatcccattgttgaattgtgattcggagctgaaaacagagcttgcatttt |
109 |
Q |
| |
|
|||||| ||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
1369098 |
atcatcttccttaaatttcaccccctttcattcttgcaatattgactcctaatcccattgttgaattgtgattcggaactgaaaacagagcttgcatttt |
1368999 |
T |
|
| Q |
110 |
agtaatagcttgaatacatcgcgatgctccaacatcatgccttctaaccaagtgaacgcgaacaacagcttggaacttcactacattcttactctttaga |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
1368998 |
agtaatagcttgaatacatcgcgatgctccaacatcatgccttctaaccaagtgaacgcgaacaacagcttgcaacttcactacattcttactctttaga |
1368899 |
T |
|
| Q |
210 |
agtgctctccgaactaaatatcctctaattgaagcctggatga-tatcgcagcaaattctggaggattgacatccatcgtactctcaatttttgtgataa |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| |||||||||||||||||||||| ||||||| |
|
|
| T |
1368898 |
agtgctctccgaactaaatatcctctaattgaagcctggatgattatcgcagcagattctggaggattaacatccatcgtactctcaatttcggtgataa |
1368799 |
T |
|
| Q |
309 |
ttatttctggcatctctgagcatgcatcagaggataaccgcggcttcttattagagaaatatgttgtacaaatcttctcattggtggattctttaatgta |
408 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
1368798 |
ttatttctggcatctctgagcatgcatcggaggataaccgcggcttcttattagagaaatatgttgtacaaatcttctcattggtggattccttaatgta |
1368699 |
T |
|
| Q |
409 |
ttcttccattgtggcaacaaaactatcaacaacattcacgttcgctagctgacacttagttacattcat |
477 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1368698 |
ttcttccattgtggcaacaaaactatcaacaacattcacgttcgctagctgacacttagttacattcat |
1368630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 397 - 477
Target Start/End: Complemental strand, 24840976 - 24840896
Alignment:
| Q |
397 |
ttctttaatgtattcttccattgtggcaacaaaactatcaacaacattcacgttcgctagctgacacttagttacattcat |
477 |
Q |
| |
|
||||||||||||| |||| |||||||| |||||||||||| ||||||||||||| | || ||||| ||||||||||||||| |
|
|
| T |
24840976 |
ttctttaatgtatacttctattgtggcgacaaaactatcagcaacattcacgttaggtaactgacccttagttacattcat |
24840896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 190; Significance: 1e-103; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 11 - 387
Target Start/End: Complemental strand, 23571940 - 23571563
Alignment:
| Q |
11 |
atcatcatccttaaatttcacccctttcattcttgcaatattgacccctaatcccattgttgaattgtgattcggagctgaaaacagagcttgcatttta |
110 |
Q |
| |
|
|||||| |||||||| ||||||| ||||||||| || | | ||| |||||||||||||||||||||| ||| ||||||||| | || ||||||||||| |
|
|
| T |
23571940 |
atcatcttccttaaacttcacccttttcattctcgcgacaatgagtcctaatcccattgttgaattgtaattaggagctgaagatggaccttgcatttta |
23571841 |
T |
|
| Q |
111 |
gtaatagcttgaatacatcgcgatgctccaacatcatgccttctaaccaagtgaacgcgaacaacagcttggaacttcactacattcttactctttagaa |
210 |
Q |
| |
|
||||||||||||| | |||||||||||||||| ||||||||||||||||||| |||||||||||||||| || ||||||||||||||||| ||||||| |
|
|
| T |
23571840 |
gtaatagcttgaacatgtcgcgatgctccaacagcatgccttctaaccaagtgtccgcgaacaacagcttgcaatttcactacattcttactatttagaa |
23571741 |
T |
|
| Q |
211 |
gtgctctccgaactaaatatcctctaattgaagcctggatga-tatcgcagcaaattctggaggattgacatccatcgtactctcaatttttgtgataat |
309 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||| | || |||||| |||| |||||||||||||||| | |||||||||||| |||||||| |
|
|
| T |
23571740 |
gtgctctccgaaccaaatatcctctaattgaagcctggattattaatgcagcagattccggaggattgacatccaccatactctcaatttcggtgataat |
23571641 |
T |
|
| Q |
310 |
tatttctggcatctctgagcatgcatcagaggataaccgcggcttcttattagagaaatatgttgtacaaatcttctc |
387 |
Q |
| |
|
| || ||||||| || |||||||||| ||||||||| | |||||| ||||||||||| |||||||||||||||||| |
|
|
| T |
23571640 |
tgttcctggcatatccgagcatgcattggaggataactgtagcttctcattagagaaatctgttgtacaaatcttctc |
23571563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 397 - 477
Target Start/End: Original strand, 18179988 - 18180068
Alignment:
| Q |
397 |
ttctttaatgtattcttccattgtggcaacaaaactatcaacaacattcacgttcgctagctgacacttagttacattcat |
477 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| ||| ||||||||||||||| || ||||||||||||||||||||| |
|
|
| T |
18179988 |
ttctttaatgtattcttccattgtagcaacaaaactgtcagcaacattcacgttcggtaactgacacttagttacattcat |
18180068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 398 - 470
Target Start/End: Original strand, 5646347 - 5646419
Alignment:
| Q |
398 |
tctttaatgtattcttccattgtggcaacaaaactatcaacaacattcacgttcgctagctgacacttagtta |
470 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||| ||||||||||||| | || ||||| |||||||| |
|
|
| T |
5646347 |
tctttcatgtattcttccattgtggcaacaaaactatcagcaacattcacgttaggtaactgacccttagtta |
5646419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 414 - 477
Target Start/End: Complemental strand, 26375666 - 26375603
Alignment:
| Q |
414 |
ccattgtggcaacaaaactatcaacaacattcacgttcgctagctgacacttagttacattcat |
477 |
Q |
| |
|
|||||||||||| |||||||||| |||||||||| |||| || ||||||||||||||||||||| |
|
|
| T |
26375666 |
ccattgtggcaataaaactatcagcaacattcactttcggtaactgacacttagttacattcat |
26375603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 76; Significance: 6e-35; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 102 - 221
Target Start/End: Complemental strand, 7657992 - 7657873
Alignment:
| Q |
102 |
tgcattttagtaatagcttgaatacatcgcgatgctccaacatcatgccttctaaccaagtgaacgcgaacaacagcttggaacttcactacattcttac |
201 |
Q |
| |
|
|||||||||| ||||||||||| ||||||| ||| ||||||| ||||||||||||||||||| | |||||| ||||||| ||||||||| ||||||||| |
|
|
| T |
7657992 |
tgcattttagcaatagcttgaacacatcgcaatgttccaacagcatgccttctaaccaagtgcccacgaacagcagcttgcaacttcactgcattcttac |
7657893 |
T |
|
| Q |
202 |
tctttagaagtgctctccga |
221 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
7657892 |
tctttagaagtgctctccga |
7657873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 225 - 388
Target Start/End: Complemental strand, 7657775 - 7657611
Alignment:
| Q |
225 |
aaatatcctctaattgaagcctggatgat-atcgcagcaaattctggaggattgacatccatcgtactctcaatttttgtgataattatttctggcatct |
323 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| ||||| |||| || ||||||||||||| | || ||||| | | |||| |||| |||||||||||| |
|
|
| T |
7657775 |
aaatatcctctaattgaagcctggatgattatcacagcagattccggtggattgacatccaccttattctcagtctcggtgacaattgtttctggcatct |
7657676 |
T |
|
| Q |
324 |
ctgagcatgcatcagaggataaccgcggcttcttattagagaaatatgttgtacaaatcttctca |
388 |
Q |
| |
|
| ||||| |||| ||||||||| ||||||| | ||||||||||| ||||||||||||||||||| |
|
|
| T |
7657675 |
ccgagcagacatcggaggataactgcggcttttcattagagaaatctgttgtacaaatcttctca |
7657611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 400 - 448
Target Start/End: Original strand, 28660058 - 28660106
Alignment:
| Q |
400 |
tttaatgtattcttccattgtggcaacaaaactatcaacaacattcacg |
448 |
Q |
| |
|
||||||||||||||||| ||||||| ||||||||||| |||| |||||| |
|
|
| T |
28660058 |
tttaatgtattcttccaatgtggcaccaaaactatcagcaacgttcacg |
28660106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 396 - 430
Target Start/End: Complemental strand, 52900523 - 52900489
Alignment:
| Q |
396 |
attctttaatgtattcttccattgtggcaacaaaa |
430 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
52900523 |
attctttaatgtattcttccattgtggcaacaaaa |
52900489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University