View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15295_low_3 (Length: 441)
Name: NF15295_low_3
Description: NF15295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15295_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 10 - 387
Target Start/End: Complemental strand, 1405837 - 1405454
Alignment:
| Q |
10 |
cagagaaagtgtgaagttataacaggcnnnnnnnccagatcttcaaaatgatcatttagaccaaaccataaacttttcatttgggttccatttctacgag |
109 |
Q |
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| T |
1405837 |
cagagaaagtgtgaaggtataataggcaaaaaaaccagatcttcaaaatgatcatttagaccaaaccataaacttttcatttgggttccatctccacgag |
1405738 |
T |
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| Q |
110 |
tcttcaacggaggaacactcctcacagaggggcccccttctatccttttatctaaccaaaacaaaatcgtcttatttgattcaagggagaggaggagaag |
209 |
Q |
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| T |
1405737 |
tcttcaacaggggaacactccccacagaggg-cccccttctatccttttatctaaccaaaacaaaatcgtcttatttgattcaagggagaggaggaga-g |
1405640 |
T |
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| Q |
210 |
ggagcggagggattgtaa--------gtttgattgaatgaaacaatttgaaggagagctaaaattagtttaagagggatttgtctttcctcccctcctct |
301 |
Q |
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| T |
1405639 |
ggagcggagggattgtaacaaattgagtttggttgaatgaaacaatttgaaggagagctaaaattagtttaagagggatttgtctttcctcccctcctct |
1405540 |
T |
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| Q |
302 |
cacctcccctcgaataaaaataaagagaccctaaagaatttgaacaattcttgctttccttgagaatagatcagtctagcacgctg |
387 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
1405539 |
cacctcccctcgaataaaaataaagagaccctaaagaatttgaacaattcttgctttccttgggaatagatcagtctagcacgctg |
1405454 |
T |
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