View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15295_low_4 (Length: 425)
Name: NF15295_low_4
Description: NF15295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15295_low_4 |
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| [»] scaffold0077 (1 HSPs) |
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| [»] scaffold0118 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 298 - 415
Target Start/End: Complemental strand, 2311745 - 2311628
Alignment:
| Q |
298 |
gtaagactagatctggacaagatctgcgttactaaaatcggaacagtgctccggcggccaagtccaaatcgccggcaaacgagaacgaaggaggagggac |
397 |
Q |
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| T |
2311745 |
gtaagactagatctcgaccatatctgcgttactaaaaccggaactgtcctccggcggccgcgtccaaatcgccggcaaacgagaacgaaggaggagggac |
2311646 |
T |
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| Q |
398 |
atcgtgttgttgttgttg |
415 |
Q |
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| T |
2311645 |
actgtgttgttgttgttg |
2311628 |
T |
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Target: chr2 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 299 - 410
Target Start/End: Original strand, 17460106 - 17460217
Alignment:
| Q |
299 |
taagactagatctggacaagatctgcgttactaaaatcggaacagtgctccggcggccaagtccaaatcgccggcaaacgagaacgaaggaggagggaca |
398 |
Q |
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| T |
17460106 |
taagactagatctcgaccagatctgcgttactaaaactggaactgtcctccggcggtcgcatccaaattgccggcaaacgagaacgaaggaggagggaca |
17460205 |
T |
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| Q |
399 |
tcgtgttgttgt |
410 |
Q |
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| T |
17460206 |
ctgtgttgttgt |
17460217 |
T |
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Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 139 - 221
Target Start/End: Original strand, 2325640 - 2325722
Alignment:
| Q |
139 |
gtcatcaaatagattgtttttgttaattcctttgaaacccattaatcaaaagttgtaataaagtaaacccttttgatgttttg |
221 |
Q |
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| T |
2325640 |
gtcatcaaagggattgtttttgttgattcctttgaaacccattaatcaaaaagtgtgatagattaaacccttttggtgttttg |
2325722 |
T |
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Target: scaffold0077 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0077
Description:
Target: scaffold0077; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 53783 - 53729
Alignment:
| Q |
1 |
agaagaaacgcagaagagag--gggcaggaggaagagagggaaaaccggcggtgg |
53 |
Q |
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| T |
53783 |
agaagaaacgcagaagagaaaagggcaggagcaagagagggaaaacctgcggtgg |
53729 |
T |
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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 39604396 - 39604473
Alignment:
| Q |
1 |
agaagaaacgcagaagagag--gggcaggaggaagagagggaaaaccggcggtggcgatacagagctttggcgaggtaa |
77 |
Q |
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| T |
39604396 |
agaagaaacacagaagagaaaagggcaggaggaagagagggaaaa-cggcggtggtgatatgaagctctggcgaggtaa |
39604473 |
T |
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Target: scaffold0118 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0118
Description:
Target: scaffold0118; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 43191 - 43142
Alignment:
| Q |
1 |
agaagaaacgcagaagagag--gggcaggaggaagagagggaaaaccggc |
48 |
Q |
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| T |
43191 |
agaagaaacgcagaaaagagaagggcaggagaaagagagggaaaaccggc |
43142 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 32694909 - 32694860
Alignment:
| Q |
1 |
agaagaaacgcagaagagag--gggcaggaggaagagagggaaaaccggc |
48 |
Q |
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| T |
32694909 |
agaagaaactcagaagagagaagggcaggaggaagagagggaaaatcggc |
32694860 |
T |
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