View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15296_high_11 (Length: 482)

Name: NF15296_high_11
Description: NF15296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15296_high_11
NF15296_high_11
[»] chr2 (2 HSPs)
chr2 (19-473)||(43378273-43378726)
chr2 (19-105)||(18334102-18334188)
[»] chr5 (3 HSPs)
chr5 (19-105)||(4637658-4637743)
chr5 (19-104)||(16422908-16422992)
chr5 (183-276)||(5969583-5969677)
[»] chr1 (2 HSPs)
chr1 (19-104)||(12502969-12503053)
chr1 (26-105)||(32122452-32122530)
[»] scaffold0879 (1 HSPs)
scaffold0879 (19-104)||(2687-2773)
[»] chr4 (2 HSPs)
chr4 (19-104)||(24468424-24468510)
chr4 (27-67)||(7807332-7807372)
[»] chr6 (2 HSPs)
chr6 (32-105)||(8460780-8460853)
chr6 (19-104)||(3243274-3243359)
[»] chr8 (3 HSPs)
chr8 (23-76)||(9790632-9790685)
chr8 (33-103)||(5492304-5492374)
chr8 (32-68)||(41745949-41745985)
[»] chr7 (2 HSPs)
chr7 (32-105)||(13851670-13851743)
chr7 (28-68)||(924038-924078)
[»] chr3 (2 HSPs)
chr3 (32-71)||(4995433-4995472)
chr3 (32-66)||(31614478-31614512)


Alignment Details
Target: chr2 (Bit Score: 323; Significance: 0; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 19 - 473
Target Start/End: Original strand, 43378273 - 43378726
Alignment:
Q  19 gtacaaactttgagtggttctcctttgcacgtcttgtgcgagatgaaccactccttttgttctaattaattttattttggcttgttcnnnnnnnnnnnnn 118  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |||||||||| ||||||||||||||                 
T  43378273 gtacaaactttgagtggttctcctttgcacgtcttgtgtgagatgaaccactcattttgttataattaatttcattttggcttgttcaaaaaaacaaaac 43378372  T
Q  119 nnnnnncttgtatgtggctctacaaaattacgaccctataattattctacatcggaaaatttcaactgaagcagcacgaatccattttatactctaaatt 218  Q
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43378373 aaaaaacttgtatgtggctctacaaaattacgaccctataattattctacatcggaaaatttcaactgaagcagcacgaatccattttatactctaaatt 43378472  T
Q  219 tcatcgaacaactctatttatgcatatcaatatcatcaacaaacatcacaattccatctaccatcnnnnnnnctc-tcacaattttcaaagaataaagtc 317  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||         || ||||||||||||||||||||||||    
T  43378473 tcatcgaacaactctatttatgcatattaatatcatcaacaaacatcacaattccatctaccatttttttttttcctcacaattttcaaagaataaagtc 43378572  T
Q  318 gtatcaaataatcaactctatatgcatatctttaatatcggaaaaccactcatcaagagtcttttccgctgcattgccatgttacatcaccgacaacaac 417  Q
    ||||||||||| ||||||||||||||||||||||||||||||||| ||||  ||||||||||||||||||||||||||||||||||||||||||||||||    
T  43378573 gtatcaaataaccaactctatatgcatatctttaatatcggaaaatcact--tcaagagtcttttccgctgcattgccatgttacatcaccgacaacaac 43378670  T
Q  418 tacatttggacatcatcgtccattccctcatttgtaacaacaactttgttttcatc 473  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43378671 tacatttggacatcatcgtccattccctcatttgtaacaacaactttgttttcatc 43378726  T

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Target: chr2; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 19 - 105
Target Start/End: Complemental strand, 18334188 - 18334102
Alignment:
Q  19 gtacaaactttgagtggttctcctttgcacgtcttgtgcgagatgaaccactccttttgttctaattaattttattttggcttgttc 105  Q
    ||||||||||||||| |||||| |||||||| |||||| ||||||||||||||||||||||||| ||||||| ||||| ||||||||    
T  18334188 gtacaaactttgagtagttctcttttgcacgccttgtgtgagatgaaccactccttttgttctatttaatttcattttagcttgttc 18334102  T

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Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 19 - 105
Target Start/End: Original strand, 4637658 - 4637743
Alignment:
Q  19 gtacaaactttgagtggttctcctttgcacgtcttgtgcgagatgaaccactccttttgttctaattaattttattttggcttgttc 105  Q
    |||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| | | |||||||  ||||||||||||||    
T  4637658 gtacaaactttgagtggttctcttttgcacgtcttgtgcaagatgaaccactccttttgat-ttattaattccattttggcttgttc 4637743  T

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Target: chr5; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 19 - 104
Target Start/End: Complemental strand, 16422992 - 16422908
Alignment:
Q  19 gtacaaactttgagtggttctcctttgcacgtcttgtgcgagatgaaccactccttttgttctaattaattttattttggcttgtt 104  Q
    |||||||||||||||||||||| ||| |||||||||| ||| ||||||||||||||||||||||||||||||  |||| |||||||    
T  16422992 gtacaaactttgagtggttctcttttacacgtcttgt-cgaaatgaaccactccttttgttctaattaatttccttttagcttgtt 16422908  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 183 - 276
Target Start/End: Original strand, 5969583 - 5969677
Alignment:
Q  183 actgaagcagcacgaatccattttatactctaaatttcatcgaacaactctat-ttatgcatatcaatatcatcaacaaacatcacaattccatc 276  Q
    |||||| ||||||  |||||||| | ||||| ||||||||| |||| ||| || |||||||| | | |||||||| |||||||||||||||||||    
T  5969583 actgaaacagcaccgatccatttcacactctgaatttcatcaaacagctccatattatgcatgttactatcatcagcaaacatcacaattccatc 5969677  T

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Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 19 - 104
Target Start/End: Complemental strand, 12503053 - 12502969
Alignment:
Q  19 gtacaaactttgagtggttctcctttgcacgtcttgtgcgagatgaaccactccttttgttctaattaattttattttggcttgtt 104  Q
    ||||||||||||||||| |||| |||||||| ||||||||||||||| ||||||||||| ||| |||||||  |||||||||||||    
T  12503053 gtacaaactttgagtggctctcttttgcacgccttgtgcgagatgaatcactccttttgatct-attaattccattttggcttgtt 12502969  T

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Target: chr1; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 26 - 105
Target Start/End: Original strand, 32122452 - 32122530
Alignment:
Q  26 ctttgagtggttctcctttgcacgtcttgtgcgagatgaaccactccttttgttctaattaattttattttggcttgttc 105  Q
    ||||||||||||||| |||||||| ||||||||||||||||||||||| ||| | | |||||||  ||||||||||||||    
T  32122452 ctttgagtggttctcttttgcacgccttgtgcgagatgaaccactcctcttgat-ttattaattccattttggcttgttc 32122530  T

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Target: scaffold0879 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0879
Description:

Target: scaffold0879; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 19 - 104
Target Start/End: Original strand, 2687 - 2773
Alignment:
Q  19 gtacaaactttgagtggttctccttt-gcacgtcttgtgcgagatgaaccactccttttgttctaattaattttattttggcttgtt 104  Q
    ||||||| ||| |||||||||| ||| ||||||||||||||||||||||||||| ||||| || ||||||||  |||||||||||||    
T  2687 gtacaaaatttaagtggttctctttttgcacgtcttgtgcgagatgaaccactctttttgatcaaattaattccattttggcttgtt 2773  T

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Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 19 - 104
Target Start/End: Original strand, 24468424 - 24468510
Alignment:
Q  19 gtacaaactttgagtggttctccttt-gcacgtcttgtgcgagatgaaccactccttttgttctaattaattttattttggcttgtt 104  Q
    ||||||| ||| |||||||||| ||| ||||||||||||||||||||||||||| ||||| || ||||||||  |||||||||||||    
T  24468424 gtacaaaatttaagtggttctctttttgcacgtcttgtgcgagatgaaccactctttttgatcaaattaattccattttggcttgtt 24468510  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 27 - 67
Target Start/End: Complemental strand, 7807372 - 7807332
Alignment:
Q  27 tttgagtggttctcctttgcacgtcttgtgcgagatgaacc 67  Q
    |||| ||||||||| ||||| ||||||||||||||||||||    
T  7807372 tttgggtggttctcttttgcgcgtcttgtgcgagatgaacc 7807332  T

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Target: chr6 (Bit Score: 46; Significance: 5e-17; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 32 - 105
Target Start/End: Original strand, 8460780 - 8460853
Alignment:
Q  32 gtggttctcctttgcacgtcttgtgcgagatgaaccactccttttgttctaattaattttattttggcttgttc 105  Q
    ||||||||| |||||||| ||||||||||||||| ||||| ||||||| |||||||||  ||||||||||||||    
T  8460780 gtggttctcttttgcacgccttgtgcgagatgaatcactcattttgttttaattaattccattttggcttgttc 8460853  T

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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 19 - 104
Target Start/End: Complemental strand, 3243359 - 3243274
Alignment:
Q  19 gtacaaactttgagtggttctcctttgcacgtcttgtgcgagatgaaccactccttttgttctaattaattttattttggcttgtt 104  Q
    |||||||||||  ||||||||| |||||| | ||||| ||| ||||||||||||||||| | |||||||||  |||||||||||||    
T  3243359 gtacaaactttacgtggttctcttttgcatgccttgtacgaaatgaaccactccttttgatttaattaattccattttggcttgtt 3243274  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 23 - 76
Target Start/End: Complemental strand, 9790685 - 9790632
Alignment:
Q  23 aaactttgagtggttctcctttgcacgtcttgtgcgagatgaaccactcctttt 76  Q
    |||||||||| ||||||| |||||||| |||||| |||||||||||||||||||    
T  9790685 aaactttgagcggttctcttttgcacgccttgtgtgagatgaaccactcctttt 9790632  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 33 - 103
Target Start/End: Original strand, 5492304 - 5492374
Alignment:
Q  33 tggttctcctttgcacgtcttgtgcgagatgaaccactccttttgttctaattaattttattttggcttgt 103  Q
    ||||| || ||||||||| ||||| |||||||||||||| ||||  ||||||  |||| ||||||||||||    
T  5492304 tggttttcttttgcacgttttgtgtgagatgaaccactcattttaatctaatatatttcattttggcttgt 5492374  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 32 - 68
Target Start/End: Complemental strand, 41745985 - 41745949
Alignment:
Q  32 gtggttctcctttgcacgtcttgtgcgagatgaacca 68  Q
    ||||||||||||||||| ||||||||||| |||||||    
T  41745985 gtggttctcctttgcacatcttgtgcgagttgaacca 41745949  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 32 - 105
Target Start/End: Original strand, 13851670 - 13851743
Alignment:
Q  32 gtggttctcctttgcacgtcttgtgcgagatgaaccactccttttgttctaattaattttattttggcttgttc 105  Q
    ||||||||| |||||||  ||||| ||||||||| ||||| || || ||||||  |||||||||||||||||||    
T  13851670 gtggttctcttttgcacaccttgtacgagatgaatcactctttgtgatctaatatattttattttggcttgttc 13851743  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 28 - 68
Target Start/End: Original strand, 924038 - 924078
Alignment:
Q  28 ttgagtggttctcctttgcacgtcttgtgcgagatgaacca 68  Q
    ||||||||||||| |||||||  ||||||||||||||||||    
T  924038 ttgagtggttctcttttgcacaccttgtgcgagatgaacca 924078  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 32 - 71
Target Start/End: Original strand, 4995433 - 4995472
Alignment:
Q  32 gtggttctcctttgcacgtcttgtgcgagatgaaccactc 71  Q
    ||||||||| |||||||| |||||||||||||||||||||    
T  4995433 gtggttctcttttgcacgccttgtgcgagatgaaccactc 4995472  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 32 - 66
Target Start/End: Complemental strand, 31614512 - 31614478
Alignment:
Q  32 gtggttctcctttgcacgtcttgtgcgagatgaac 66  Q
    ||||||||| |||||||||||||||||||||||||    
T  31614512 gtggttctcttttgcacgtcttgtgcgagatgaac 31614478  T

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