View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15296_high_12 (Length: 478)
Name: NF15296_high_12
Description: NF15296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15296_high_12 |
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Alignment Details
Target: chr3 (Bit Score: 182; Significance: 3e-98; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 284 - 469
Target Start/End: Complemental strand, 10915769 - 10915584
Alignment:
| Q |
284 |
aatagcctcaaagactttgttcacttttaaaagatatgaaatatatagccgctaatctataaccgttgagccacggtgtgccactaacaataacttctac |
383 |
Q |
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| T |
10915769 |
aatagcctcaaagactttgttcacttttaaaagatatgaaatatatagccgctaatctataaccgttgagccacggtgtgccactaacaataacttctac |
10915670 |
T |
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| Q |
384 |
gcctccttgctatatataagctatatataagtggattctttgcaattcccaaaggtacgattcaacgaccctataactctctataa |
469 |
Q |
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| T |
10915669 |
gcctccttgctatatataagctatatataagtggattctttgcaattcccaaaggtacgattcatcgaccctataactctctataa |
10915584 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 16 - 186
Target Start/End: Complemental strand, 10916023 - 10915853
Alignment:
| Q |
16 |
attatagtattttcttgtattctaagatagtggtaatgaaattaaataaagcagcaacaaatattatttagattgtcttctctctttattttagagatat |
115 |
Q |
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| T |
10916023 |
attatagtattttcttgtattctaagatagtggtaatgaaattaaataaagcagcaacaaatattatttagattgtcttctctctttattttagagatac |
10915924 |
T |
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| Q |
116 |
gacacatgcgtgctcttcaattcagacatatcgaattttctttcataacctaccgcttataatactttaaa |
186 |
Q |
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| T |
10915923 |
gacacatgcgtgctcttcaattcagacatatcgaattttctttcataacctaccgcttataatactttaaa |
10915853 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 26 - 205
Target Start/End: Complemental strand, 10921090 - 10920910
Alignment:
| Q |
26 |
tttcttgtattctaagatagtggtaatgaaattaaataaagcagcaacaaatattatttagattgtctt---ctctctttattttagagatatgacacat |
122 |
Q |
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| T |
10921090 |
tttcttgtactcaaagatagtggtaatgaaattaaataaagaagcaacaaatattatttagattgtcttattctctttttactttagagatacgaca--t |
10920993 |
T |
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| Q |
123 |
gcgtgctcttcaattcagacatatcgaattttctttcataacctaccgcttataatactttaaatagataagtttaaaaatag |
205 |
Q |
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| T |
10920992 |
gcatgttcttcaattcagacatatcaaatgttctttcataccctacggcttataatactttaaatagataagtttaaaaatag |
10920910 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 36 - 94
Target Start/End: Complemental strand, 10925982 - 10925924
Alignment:
| Q |
36 |
tctaagatagtggtaatgaaattaaataaagcagcaacaaatattatttagattgtctt |
94 |
Q |
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| T |
10925982 |
tctaagataatggtaatgaaattaaacaagacagcaataaatattatttagattgtctt |
10925924 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 49 - 106
Target Start/End: Complemental strand, 3400429 - 3400372
Alignment:
| Q |
49 |
taatgaaattaaataaagcagcaacaaatattatttagattgtcttctctctttattt |
106 |
Q |
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| T |
3400429 |
taatgaaatgaaataagacagcaacaaatattatttaaattatcttctctttttattt |
3400372 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 50 - 115
Target Start/End: Original strand, 797376 - 797444
Alignment:
| Q |
50 |
aatgaaattaaataaagcagcaacaaatattatttagattgtcttct---ctctttattttagagatat |
115 |
Q |
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| T |
797376 |
aatgaaatgaaataagacagcaacaaatattatttagattatcttcttctctttttattttagatatat |
797444 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 30 - 115
Target Start/End: Complemental strand, 10946214 - 10946126
Alignment:
| Q |
30 |
ttgtattctaagatagtggtaatgaaattaaataaagcagcaacaaatattatttagattgtc---ttctctctttattttagagatat |
115 |
Q |
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| T |
10946214 |
ttgtactctaagataatggtaatgaaatcaaacaagacatcaataaatattatttaaattgtcttattatctctttatttttgagatat |
10946126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 31 - 96
Target Start/End: Original strand, 29797329 - 29797394
Alignment:
| Q |
31 |
tgtattctaagatagtggtaatgaaattaaataaagcagcaacaaatattatttagattgtcttct |
96 |
Q |
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| T |
29797329 |
tgtattctaagaaaatgataatgaaatgaaataagatagcaaaaaatattatttagattgtcttct |
29797394 |
T |
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