View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15296_high_14 (Length: 475)
Name: NF15296_high_14
Description: NF15296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15296_high_14 |
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Alignment Details
Target: chr8 (Bit Score: 366; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 13 - 456
Target Start/End: Complemental strand, 15248734 - 15248287
Alignment:
| Q |
13 |
aaaatattgaaggatactaaccgtaaatgtaataattacgatatataaaatagttgaatgattcgtcaaaaaatatagtaaaatgattatagcatttcat |
112 |
Q |
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| T |
15248734 |
aaaatattgaaggatactaaccgtaaatgtaataattacgatatataaaatagttgaacgattcgtcaaaaaatatagtaaaatgattatagcatttcat |
15248635 |
T |
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| Q |
113 |
atttcgttttataaatataaagacatatttcttacccattctacgaagaaatgacnnnnnnnatctcctgataaacctggaaatacctgccaccaatgtg |
212 |
Q |
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| T |
15248634 |
atttcgttttataaatataaagacatatttcttacccattctacgaagaaatgactttttttatctcctgacaaacctggaaatacctgccaccaatgtg |
15248535 |
T |
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| Q |
213 |
gaagagattagcgattgttaacggtgagcgagtggtttctaggtgaattcacctacgtggttaaacgatgttacatgaactcattctacgtagattgaat |
312 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| |||||||||||||||||| |||||||||||||||| |
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| T |
15248534 |
gaagagattagcgattgttaacggtgagggagtggtttctaggtgaactcacctacgtggttaagcgatgttacatgaactcaatctacgtagattgaat |
15248435 |
T |
|
| Q |
313 |
tcac----ctacgtggttaagcgatgttacatgaactcaatctacgtagattgaaattaacatagcttacgtattgtgaacttagaatgagataaaatta |
408 |
Q |
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| T |
15248434 |
tcacctagctacgtggttaagcgatgttacatgaactcaatctacgtagattgaaattaacatagcctacgtattgtgaacttataatgagataaaatta |
15248335 |
T |
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| Q |
409 |
aagaaaaacctgccatccagcatggataaacatatggtcatttacggg |
456 |
Q |
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| T |
15248334 |
gagaaaaacctgccatcctgcatggatatacatatggtcatttacggg |
15248287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 402 - 446
Target Start/End: Complemental strand, 15229574 - 15229530
Alignment:
| Q |
402 |
aaaattaaagaaaaacctgccatccagcatggataaacatatggt |
446 |
Q |
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| T |
15229574 |
aaaattaaagaaaaacctgccaccctgcatggataaacatatggt |
15229530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 131 - 166
Target Start/End: Complemental strand, 15230538 - 15230503
Alignment:
| Q |
131 |
aaagacatatttcttacccattctacgaagaaatga |
166 |
Q |
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| T |
15230538 |
aaagacatatttcttacccattctacgaagaaatga |
15230503 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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