View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15296_high_18 (Length: 420)

Name: NF15296_high_18
Description: NF15296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15296_high_18
NF15296_high_18
[»] chr3 (2 HSPs)
chr3 (18-420)||(3898777-3899179)
chr3 (22-420)||(46283103-46283507)
[»] scaffold0137 (1 HSPs)
scaffold0137 (18-420)||(5108-5510)


Alignment Details
Target: chr3 (Bit Score: 387; Significance: 0; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 18 - 420
Target Start/End: Complemental strand, 3899179 - 3898777
Alignment:
Q  18 aaggagagaagagtatgtgttccatgcaaaactagcgcaacaagcggaacgctacgaggagatggtttccttcatgcagaagatagttgtagggtacaca 117  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3899179 aaggagagaagagtatgtgttccatgcaaaactagcacaacaagcggaacgctacgaggagatggtttccttcatgcagaagatagttgtagggtacaca 3899080  T
Q  118 ccagcctcagagcttagcttggaagagatgaacctactatctgtcgcttacaagaacgcgatcgaaccacttcgtgcggcgttgagaatcctttcgaagg 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  3899079 ccagcctcagagcttagcttggaagagatgaacctactatctgtcgcttacaagaacgcgaccgaaccacttcgtgcggcgttgagaatcctttcgaagg 3898980  T
Q  218 aggaagaaggtagaaagaatgaagatgatcacgttgtgcatgttaagaaatacaagtccaaagttgaatcggagttggagaatgtttgtggtagtattct 317  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  3898979 aggaagaaggtagaaagaatgaagatgatcactttgtgcatgttaagaaatacaagtccaaagttgaatccgagttggagaatgtttgtggtagtattct 3898880  T
Q  318 ggagttgctggattcgaaacttataccttctgcttcatcgagtgagattagggttgtttattatcagatgaaaggtgattatcaaaggtatatggctgag 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3898879 ggagttgctggattcgaaacttataccttctgcttcatcgagtgagattagggttgtttattatcagatgaaaggtgattatcaaaggtatatggctgag 3898780  T
Q  418 ttt 420  Q
    |||    
T  3898779 ttt 3898777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 22 - 420
Target Start/End: Original strand, 46283103 - 46283507
Alignment:
Q  22 agagaagagtatgtgttccatgcaaaactagcgcaacaagcggaacgctacgaggagatggtttccttcatgcagaagatagttgtagggtacacaccag 121  Q
    |||||| ||||||||| ||  |||||||| ||  ||||||| |||||||||||||||||||| ||||||||||||||| | || || |||| |||||||     
T  46283103 agagaacagtatgtgtacctagcaaaactcgcagaacaagctgaacgctacgaggagatggtctccttcatgcagaagcttgtagtggggtccacaccat 46283202  T
Q  122 cctcagagcttagcttggaagagatgaacctactatctgtcgcttacaagaacgcgatcgaaccacttcgtgcggcgttgagaatcctttc-------ga 214  Q
    | |||||||||||| | ||||||| ||||||  |||| |||||||||||||||| ||||| | | || ||||| |||| ||||||| ||||       ||    
T  46283203 catcagagcttagcgtcgaagagaggaacctcatatccgtcgcttacaagaacgtgatcggatcgctacgtgctgcgtggagaatcgtttcttcgattga 46283302  T
Q  215 a--ggaggaagaaggtagaaagaatgaagatgatcacgttgtgcatgttaagaaatacaagtccaaagttgaatcggagttggagaatgtttgtggtagt 312  Q
    |  | |||||||||||||||||||||||||| ||   ||||||| ||| ||| | ||||  |||||||||||||| ||||||  ||||||||||||||||    
T  46283303 acagaaggaagaaggtagaaagaatgaagatcat---gttgtgcttgtgaaggattacagatccaaagttgaatcagagttgacgaatgtttgtggtagt 46283399  T
Q  313 attctggagttgctggattcgaaacttataccttctgcttcatcgagtgagattagggttgtttattatcagatgaaaggtgattatcaaaggtatatgg 412  Q
    |||||||||||| |||||||||| ||||||||||| ||||| |||||||| | || |||| |||||||| ||||||||||||||||||| |||||| |||    
T  46283400 attctggagttgttggattcgaatcttataccttcagcttcttcgagtgaaagtaaggttttttattataagatgaaaggtgattatcataggtatttgg 46283499  T
Q  413 ctgagttt 420  Q
    ||||||||    
T  46283500 ctgagttt 46283507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0137 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: scaffold0137
Description:

Target: scaffold0137; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 18 - 420
Target Start/End: Complemental strand, 5510 - 5108
Alignment:
Q  18 aaggagagaagagtatgtgttccatgcaaaactagcgcaacaagcggaacgctacgaggagatggtttccttcatgcagaagatagttgtagggtacaca 117  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5510 aaggagagaagagtatgtgttccatgcaaaactagcacaacaagcggaacgctacgaggagatggtttccttcatgcagaagatagttgtagggtacaca 5411  T
Q  118 ccagcctcagagcttagcttggaagagatgaacctactatctgtcgcttacaagaacgcgatcgaaccacttcgtgcggcgttgagaatcctttcgaagg 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||    
T  5410 ccagcctcagagcttagcttggaagagatgaacctactatctgtcgcttacaagaacgcgaccgaaccacttcgtgcggcgttgagaatcctttcaaagg 5311  T
Q  218 aggaagaaggtagaaagaatgaagatgatcacgttgtgcatgttaagaaatacaagtccaaagttgaatcggagttggagaatgtttgtggtagtattct 317  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  5310 aggaagaaggtagaaagaatgaagatgatcactttgtgcatgttaagaaatacaagtccaaagttgaatcagagttggagaatgtttgtggtagtattct 5211  T
Q  318 ggagttgctggattcgaaacttataccttctgcttcatcgagtgagattagggttgtttattatcagatgaaaggtgattatcaaaggtatatggctgag 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5210 ggagttgctggattcgaaacttataccttctgcttcatcgagtgagattagggttgtttattatcagatgaaaggtgattatcaaaggtatatggctgag 5111  T
Q  418 ttt 420  Q
    |||    
T  5110 ttt 5108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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