View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15296_high_20 (Length: 406)
Name: NF15296_high_20
Description: NF15296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15296_high_20 |
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Alignment Details
Target: chr1 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 19 - 330
Target Start/End: Original strand, 48889789 - 48890100
Alignment:
| Q |
19 |
aagctgcatatttattctatctcaggagatacacttacagaacagattgttcttgagaagcaccgaggagcaatcagtgtaatcaaatattctccggatg |
118 |
Q |
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| T |
48889789 |
aagctgcatatttattctatctcaggagatacacttacagaacaaattgttcttgagaagcaccgaggagcaatcagtgtaatcaaatattctccagatg |
48889888 |
T |
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| Q |
119 |
tttccatgtttgcatcagctgatcttaatcgtgaagctgttgtgtgggactgtgcttccagagaggtaacttgagcctgatatgactgttccatgaagtt |
218 |
Q |
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| T |
48889889 |
tttccatgtttgcatcagctgatctaaatcgtgaagctgttgtgtgggactgtgcttccagagaggtaacttgagcctgatatgactgttccatgaagtt |
48889988 |
T |
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| Q |
219 |
gaaatgtcttgtgcctgaatgctttgtttgtcttatatataccaaattttcctatgtgaaatgagaaatacatgacttatactctcatgattgtaacatt |
318 |
Q |
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| T |
48889989 |
gatatgtcttgtgcctgaatgctttgtttgtcctatatataccaaattttcctatgtgaaatgagaaatacatgacttatactctcatgattgtaacatt |
48890088 |
T |
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| Q |
319 |
attgcttcaatt |
330 |
Q |
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| T |
48890089 |
attgcttcaatt |
48890100 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 106 - 182
Target Start/End: Complemental strand, 45095088 - 45095012
Alignment:
| Q |
106 |
tattctccggatgtttccatgtttgcatcagctgatcttaatcgtgaagctgttgtgtgggactgtgcttccagaga |
182 |
Q |
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| T |
45095088 |
tattctccagatttttcaatgtttgcatcaggggatgttaatcgagaagctgttgtttgggaccgtgcctcccgaga |
45095012 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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