View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15296_high_23 (Length: 369)
Name: NF15296_high_23
Description: NF15296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15296_high_23 |
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Alignment Details
Target: chr6 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 16 - 364
Target Start/End: Complemental strand, 32992317 - 32991961
Alignment:
| Q |
16 |
agataaaaagaagtaaaaagaaaatcacttgaaccaaccgtggataccgattcaaaccaattcaatctggttc----aaacaaactgaagatcaaacaaa |
111 |
Q |
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| T |
32992317 |
agataaaaagaagtacaaagaaaatcgcttgagccaaccgtggatatcgattcaaaccaattcaatctggttcgttcaaccaaactgaagatcaaaccaa |
32992218 |
T |
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| Q |
112 |
ctagtgaaccggttggttctcggctaaaccggtttaattgaccggttcgtttcagnnnnnnnaaaacattgaagtaaatcccctcacaggccacaaatgt |
211 |
Q |
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| T |
32992217 |
ctagtgaaccggttggttctcggctaaaccggtttaattgaccggttcgtttcagttttttttaaacattgaagtaaatcccctcacaggccacaaatgt |
32992118 |
T |
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| Q |
212 |
aaacaaattgttcataagaaatagtagaagaaaaattgaccaagatatat----nnnnnnnntgaagatcaaagaaaataacatgctagctaaattcagc |
307 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
32992117 |
aaacaaactgttcataagaaatagtagaagaaaaattgaccaagatatataaaaaaaaaaaatgaagatcaaagaaaataacatgctagctaaattcagc |
32992018 |
T |
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| Q |
308 |
taatcaacagataaatttttgccatatagaaaatactcactctctcttcttttcact |
364 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
32992017 |
taatcaacagataaattcttgccatatagaaaatactcactctctcttcttttcact |
32991961 |
T |
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