View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15296_high_29 (Length: 349)
Name: NF15296_high_29
Description: NF15296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15296_high_29 |
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Alignment Details
Target: chr8 (Bit Score: 247; Significance: 1e-137; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 13 - 323
Target Start/End: Complemental strand, 11115623 - 11115311
Alignment:
| Q |
13 |
cataggcaagaatgatatttctgtaatagaaacaattccaagaggtcctttcacaagcattggacgattccatatggttgtcccatgtttcttcccattg |
112 |
Q |
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|||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11115623 |
cataagcaagaatgctatttctgtaatagaaacaattccaagaggtcctttcacaagcattggacgattccatatggttgtcccatgtttcttcccattg |
11115524 |
T |
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| Q |
113 |
ccactgattgtgcaaaaactcaaagattagatttataataattnnnnnnnnnnnnn--tcatacaagttaacaagattaagagaacaaaaatgttacatt |
210 |
Q |
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| T |
11115523 |
ccactgattgtgcaaaaactcaaagattagatttataataatttaaaaataaaaaaaatcatacaagtaaacaagattaagagaacaaaaatgttacatt |
11115424 |
T |
|
| Q |
211 |
tccatgttgctctcatttgattttttggctatgtggagaaagacacatcccaaaatggctattaacaacactggaaaagtgtaaataagaatccttgtac |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11115423 |
tccatgttgctctcatttgattttttggctatgtggagaaagacacatcccaaagtggctattaacaacactggaaaagtgtaaataagaatccttgtac |
11115324 |
T |
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| Q |
311 |
ctgaaattaatta |
323 |
Q |
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| T |
11115323 |
ctgaaattaatta |
11115311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 18 - 130
Target Start/End: Complemental strand, 11103764 - 11103652
Alignment:
| Q |
18 |
gcaagaatgatatttctgtaatagaaacaattccaagaggtcctttcacaagcattggacgattccatatggttgtcccatgtttcttcccattgccact |
117 |
Q |
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| T |
11103764 |
gcaagaatgctatttctgtgatagaaacaattccaagaggtccttttacaagcattggacggttccatatggttgtcccatgtttcttcccattgcgact |
11103665 |
T |
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| Q |
118 |
gattgtgcaaaaa |
130 |
Q |
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| T |
11103664 |
gattgtgcaaaaa |
11103652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 18 - 130
Target Start/End: Complemental strand, 11590202 - 11590090
Alignment:
| Q |
18 |
gcaagaatgatatttctgtaatagaaacaattccaagaggtcctttcacaagcattggacgattccatatggttgtcccatgtttcttcccattgccact |
117 |
Q |
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|||| |||| ||| ||||| |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| ||| |
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| T |
11590202 |
gcaaaaatgctatctctgtgatagaaacaattccaagaggtccttttacaagcattggacggttccatatggttgtcccatgtttcttcccattgcgact |
11590103 |
T |
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| Q |
118 |
gattgtgcaaaaa |
130 |
Q |
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|||||| |||||| |
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| T |
11590102 |
gattgtacaaaaa |
11590090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 197 - 293
Target Start/End: Complemental strand, 11103568 - 11103469
Alignment:
| Q |
197 |
aaaaatgttacatttccatgttgctctcatttgat---tttttggctatgtggagaaagacacatcccaaaatggctattaacaacactggaaaagtgta |
293 |
Q |
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| T |
11103568 |
aaaaatattacatttctatgttgctctcatttgatgattttttggctatgtggagatagacacatcccaaagtagcaattaacaagactggaaaagtgta |
11103469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 197 - 293
Target Start/End: Complemental strand, 11590014 - 11589915
Alignment:
| Q |
197 |
aaaaatgttacatttccatgttgctctcatttgat---tttttggctatgtggagaaagacacatcccaaaatggctattaacaacactggaaaagtgta |
293 |
Q |
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|||||| ||||||||| |||||||||||||||||| |||||||||||||||||| |||||||||||||| | || |||||||| |||||||||||||| |
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| T |
11590014 |
aaaaatattacatttctatgttgctctcatttgatgattttttggctatgtggagatagacacatcccaaagtagcaattaacaagactggaaaagtgta |
11589915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 316 - 349
Target Start/End: Original strand, 11115272 - 11115305
Alignment:
| Q |
316 |
attaattaataatgatatgttaatattccgatga |
349 |
Q |
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| T |
11115272 |
attaattaataatgatatgttaatattcctatga |
11115305 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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