View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15296_high_33 (Length: 335)
Name: NF15296_high_33
Description: NF15296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15296_high_33 |
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Alignment Details
Target: chr1 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 317
Target Start/End: Complemental strand, 49734742 - 49734426
Alignment:
| Q |
1 |
accaaaaattgagaaataaaacccccaataatgtgatttacaatatcaccaccatatccagaatctattctctctaaacaaagctaaaaccccttccgaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || |
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| T |
49734742 |
accaaaaattgagaaataaaacccccaataatgtgatttacaatatcaccaccatatccagaatctattctctctaaacaaagctaaaacccctcccaaa |
49734643 |
T |
|
| Q |
101 |
gtttactgactagtagcaccggcacaagcatcttcagacaaagaaggtgagtcagagacagaatccaccgtgtcatgacagggtgacacctcgacgccac |
200 |
Q |
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|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
49734642 |
gtctattgactagtagcaccggcacaagcatcttcagacaaagaaggtgagtcagagacagaatccatcgtgtcatgacagggtgacacctcgacgccac |
49734543 |
T |
|
| Q |
201 |
gcaattcctcgatcatcttaacaacatgggacattcttggccgttgatcaggtgaagcagcagtacaagacatagcaatctgaagcaaccccaccatttc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49734542 |
gcaattcctcgatcatcttaacaacatgggacattcttggccgttgatcaggtgaagcagcagtacaagacatagcaatctgaagcaaccccaccatttc |
49734443 |
T |
|
| Q |
301 |
ctcttcaatatccttat |
317 |
Q |
| |
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||||||||||||||||| |
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| T |
49734442 |
ctcttcaatatccttat |
49734426 |
T |
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