View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15296_high_37 (Length: 302)

Name: NF15296_high_37
Description: NF15296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15296_high_37
NF15296_high_37
[»] chr3 (1 HSPs)
chr3 (14-302)||(45388334-45388621)
[»] chr7 (1 HSPs)
chr7 (271-302)||(48154510-48154541)
[»] chr8 (1 HSPs)
chr8 (272-302)||(40713886-40713916)
[»] chr6 (1 HSPs)
chr6 (264-302)||(20977765-20977803)
[»] scaffold0562 (1 HSPs)
scaffold0562 (273-302)||(3729-3758)
[»] chr4 (1 HSPs)
chr4 (273-302)||(3872910-3872939)
[»] chr2 (2 HSPs)
chr2 (273-302)||(29134046-29134075)
chr2 (274-302)||(27277542-27277570)
[»] chr1 (4 HSPs)
chr1 (273-302)||(17935198-17935227)
chr1 (273-302)||(28868000-28868029)
chr1 (274-302)||(22888225-22888253)
chr1 (274-302)||(32266985-32267013)


Alignment Details
Target: chr3 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 14 - 302
Target Start/End: Original strand, 45388334 - 45388621
Alignment:
Q  14 gatgaagaaatatagtacaagtaatgttttttgatatatgataaaggtgaatgatgtcataacacccgaacaacagcgagttggagttaccacccgatag 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45388334 gatgaagaaatatagtacaagtaatgttttttgatatatgataaaggtgaatgatgtcataacacccgaacaacagcgagttggagttaccacccgatag 45388433  T
Q  114 attcagggattatgaaccgagaaagatatgacgtttttaaggggcacaagaacaattaaaatggccaatataacaattttctgcgtatgataacatggtc 213  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45388434 attcagggattatgaaccgagagagatatgacgtttttaaggggcacaagaacaattaaaatggccaatataacaattttctgcgtatgataacatggtc 45388533  T
Q  214 agtccaatatattttaacagtatgagatatctttagactacatatgaagtatttagtttataaaatttagggttaaatatgtttttggt 302  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||    
T  45388534 agtccaatatattttaacagtatgagatat-tttagactacatatgaagtatttagtttataaaatctaaggttaaatatgtttttggt 45388621  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 271 - 302
Target Start/End: Complemental strand, 48154541 - 48154510
Alignment:
Q  271 ttataaaatttagggttaaatatgtttttggt 302  Q
    ||||||||||||||||||||||||||||||||    
T  48154541 ttataaaatttagggttaaatatgtttttggt 48154510  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 272 - 302
Target Start/End: Original strand, 40713886 - 40713916
Alignment:
Q  272 tataaaatttagggttaaatatgtttttggt 302  Q
    |||||||||||||||||||||||||||||||    
T  40713886 tataaaatttagggttaaatatgtttttggt 40713916  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 264 - 302
Target Start/End: Complemental strand, 20977803 - 20977765
Alignment:
Q  264 atttagtttataaaatttagggttaaatatgtttttggt 302  Q
    ||||| |||||||| ||||||||||||||||||||||||    
T  20977803 atttactttataaattttagggttaaatatgtttttggt 20977765  T

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Target: scaffold0562 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0562
Description:

Target: scaffold0562; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 273 - 302
Target Start/End: Original strand, 3729 - 3758
Alignment:
Q  273 ataaaatttagggttaaatatgtttttggt 302  Q
    ||||||||||||||||||||||||||||||    
T  3729 ataaaatttagggttaaatatgtttttggt 3758  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 273 - 302
Target Start/End: Original strand, 3872910 - 3872939
Alignment:
Q  273 ataaaatttagggttaaatatgtttttggt 302  Q
    ||||||||||||||||||||||||||||||    
T  3872910 ataaaatttagggttaaatatgtttttggt 3872939  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 273 - 302
Target Start/End: Original strand, 29134046 - 29134075
Alignment:
Q  273 ataaaatttagggttaaatatgtttttggt 302  Q
    ||||||||||||||||||||||||||||||    
T  29134046 ataaaatttagggttaaatatgtttttggt 29134075  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 274 - 302
Target Start/End: Original strand, 27277542 - 27277570
Alignment:
Q  274 taaaatttagggttaaatatgtttttggt 302  Q
    |||||||||||||||||||||||||||||    
T  27277542 taaaatttagggttaaatatgtttttggt 27277570  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 273 - 302
Target Start/End: Complemental strand, 17935227 - 17935198
Alignment:
Q  273 ataaaatttagggttaaatatgtttttggt 302  Q
    ||||||||||||||||||||||||||||||    
T  17935227 ataaaatttagggttaaatatgtttttggt 17935198  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 273 - 302
Target Start/End: Original strand, 28868000 - 28868029
Alignment:
Q  273 ataaaatttagggttaaatatgtttttggt 302  Q
    ||||||||||||||||||||||||||||||    
T  28868000 ataaaatttagggttaaatatgtttttggt 28868029  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 274 - 302
Target Start/End: Complemental strand, 22888253 - 22888225
Alignment:
Q  274 taaaatttagggttaaatatgtttttggt 302  Q
    |||||||||||||||||||||||||||||    
T  22888253 taaaatttagggttaaatatgtttttggt 22888225  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 274 - 302
Target Start/End: Complemental strand, 32267013 - 32266985
Alignment:
Q  274 taaaatttagggttaaatatgtttttggt 302  Q
    |||||||||||||||||||||||||||||    
T  32267013 taaaatttagggttaaatatgtttttggt 32266985  T

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