View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15296_high_39 (Length: 285)
Name: NF15296_high_39
Description: NF15296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15296_high_39 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 233; Significance: 1e-129; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 16 - 269
Target Start/End: Original strand, 25064865 - 25065118
Alignment:
| Q |
16 |
gagagaattgaaaggtagataatctgcatcccataacttatgagttgaaataattttctctatcttctcaatgttatgatcagatggtgtattgttttga |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25064865 |
gagagaattgaaaggtagataatctgcatcccataacttatgagttgaaataattttctctatcttctcaatgttatgatcagatggtgtattgttttga |
25064964 |
T |
|
| Q |
116 |
agagaagcactgcatcagttcaaggaagataaatggattaatcattaacatactcaaggcactgaaaaggtatcagatgtgtaaactaatggtgtagcaa |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25064965 |
agagaagcactgcatcagttcaaggaagataaatggattaatcattaacatactcaaggcactgaaaaggtatcagatgtgtaaactaatggtgtagcaa |
25065064 |
T |
|
| Q |
216 |
nnnnnnngacataagaatgtgttcttggaggtgtgttcacgaggaggatccaag |
269 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25065065 |
tttttttgacataagaatgtgttcttggaggtgtgttcacgaggaggatccaag |
25065118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 22 - 113
Target Start/End: Original strand, 25086307 - 25086398
Alignment:
| Q |
22 |
attgaaaggtagataatctgcatcccataacttatgagttgaaataattttctctatcttctcaatgttatgatcagatggtgtattgtttt |
113 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
25086307 |
attgaaaggtagataatatgcatcccataacttctgagttgaaatagttttctctatcttctcaatgttatgatcagatggtgacttgtttt |
25086398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 71 - 157
Target Start/End: Original strand, 25440521 - 25440610
Alignment:
| Q |
71 |
ttctctatcttctcaatgttatgatcagatgg-tgtattgtttt--gaagagaagcactgcatcagttcaaggaagataaatggattaat |
157 |
Q |
| |
|
||||||| |||||| ||||||||||| | || ||||||||||| |||||||||||||||||||||| |||||||| |||||||||||| |
|
|
| T |
25440521 |
ttctctagtttctcactgttatgatcaaaagggtgtattgttttttgaagagaagcactgcatcagttgaaggaagacaaatggattaat |
25440610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University