View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15296_high_4 (Length: 625)
Name: NF15296_high_4
Description: NF15296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15296_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 514; Significance: 0; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 514; E-Value: 0
Query Start/End: Original strand, 31 - 588
Target Start/End: Original strand, 10406954 - 10407511
Alignment:
| Q |
31 |
ttattctgcaaacacatcaaattattattttaaaatgtgatcattgaatttgggaacgacacattgggcagggatattgtggattggtaatgtcacaatg |
130 |
Q |
| |
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|||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10406954 |
ttattctgcaaacacatcaaattattattttatattgtgatcattgaatttgggaacgacacattgggcagggatattgtggattggtaatgtcacaatt |
10407053 |
T |
|
| Q |
131 |
cataatccaattagtaacacaatgctcatggaaaacatgcatgcacttggtacgaacaatgtgttcttcttctgatccacaacaaaattcctccaaacaa |
230 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10407054 |
cataatccaattagtaacacaatgctcatggaaaacatgcatgcacttggtacgaacaatgtgttcttcttctgatccacaacaaaattcctccaaacaa |
10407153 |
T |
|
| Q |
231 |
attgcacattctttcattgaagaactagtagcaatttcgtccaatttgaccttctccaggattgtactatatcccttttggccaaccaatacatccatct |
330 |
Q |
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||||||||||||||||||||||||||||| ||||| |||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
10407154 |
attgcacattctttcattgaagaactagttgcaatatcgtccaattcgaccttctccaggattgtactagatcccttttggccaaccaatacatccatct |
10407253 |
T |
|
| Q |
331 |
tcaacattctatctccttcaaagttgactctgctcatatgcctagcattgtcacccataagaaatagagcgtcttccaacgcttcatcaggaagcaccga |
430 |
Q |
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|||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10407254 |
tcaatattctatctcctccaaagttgactctgctcatatgcctagcattgtcacccataagaaatagagcgtcttccaacgcttcatcaggaagcaccga |
10407353 |
T |
|
| Q |
431 |
gagagcgttgcgtaacaaggtattggacaaactatctgaatgcacggattcaaaattgtcgtaatcacataagatgttacgaggaatgatgaaggaataa |
530 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
10407354 |
gagagcgttgcgtaacaaggtattggacaaactatctgaatccacggattcaaaattgtcgtaatcacataagatgtttcgaggaatgatgaaggaataa |
10407453 |
T |
|
| Q |
531 |
tgattgaatgaaggggagtggaagtagtgacgtttaatgaggaaacattcatgtggat |
588 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10407454 |
tgattgaatgaaggggagtggaagtagtgacgtttaatgaggaaacattcatgtggat |
10407511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 494; E-Value: 0
Query Start/End: Original strand, 31 - 588
Target Start/End: Original strand, 10396734 - 10397291
Alignment:
| Q |
31 |
ttattctgcaaacacatcaaattattattttaaaatgtgatcattgaatttgggaacgacacattgggcagggatattgtggattggtaatgtcacaatg |
130 |
Q |
| |
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|||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10396734 |
ttattctgcaaacacatcaaattattattttatattgtgatcattgaatttgggaacgacacattgggcagggatattgtggattggtaatgtcacaatg |
10396833 |
T |
|
| Q |
131 |
cataatccaattagtaacacaatgctcatggaaaacatgcatgcacttggtacgaacaatgtgttcttcttctgatccacaacaaaattcctccaaacaa |
230 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10396834 |
cataatccaattagtaacacaatgctcatggaaaacatgcatgcacttggtacgaacaatgtgttcttcttctgatccacaacaaaattcctccaaacaa |
10396933 |
T |
|
| Q |
231 |
attgcacattctttcattgaagaactagtagcaatttcgtccaatttgaccttctccaggattgtactatatcccttttggccaaccaatacatccatct |
330 |
Q |
| |
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||||||||||||||||||||||||||||| ||||| |||| ||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
10396934 |
attgcacattctttcattgaagaactagttgcaatatcgttcaattcgaccttctccaggattgtactagatcccttttggccaaccaatacatccatct |
10397033 |
T |
|
| Q |
331 |
tcaacattctatctccttcaaagttgactctgctcatatgcctagcattgtcacccataagaaatagagcgtcttccaacgcttcatcaggaagcaccga |
430 |
Q |
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|||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10397034 |
tcaatattctatctccttcaaagttgactctgctcatatgcttagcattgtcacccataagaaatagagcgtcttccaacgcttcatcaggaagcaccga |
10397133 |
T |
|
| Q |
431 |
gagagcgttgcgtaacaaggtattggacaaactatctgaatgcacggattcaaaattgtcgtaatcacataagatgttacgaggaatgatgaaggaataa |
530 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||| || ||| ||||| |||| ||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
10397134 |
gagagcgttgcgtaacaaggtattggacaaactacctggatccacagattccaaatcgtcgtaatcgcataagatgttacgaggaatgatgaaggaataa |
10397233 |
T |
|
| Q |
531 |
tgattgaatgaaggggagtggaagtagtgacgtttaatgaggaaacattcatgtggat |
588 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10397234 |
tgattgaatgaaggggagtggaagtagtgacgtttaatgaggaaacattcatgtggat |
10397291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 138; E-Value: 8e-72
Query Start/End: Original strand, 391 - 588
Target Start/End: Original strand, 10401959 - 10402156
Alignment:
| Q |
391 |
gaaatagagcgtcttccaacgcttcatcaggaagcaccgagagagcgttgcgtaacaaggtattggacaaactatctgaatgcacggattcaaaattgtc |
490 |
Q |
| |
|
||||||| | |||||||||| |||||||| |||||||||||| ||||||||| |||| | ||||||||||||||||| || |||| | ||||||| ||| |
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|
| T |
10401959 |
gaaatagcgtgtcttccaacacttcatcaagaagcaccgagaaagcgttgcgcaacatgacattggacaaactatctgtatccacgaagtcaaaatcgtc |
10402058 |
T |
|
| Q |
491 |
gtaatcacataagatgttacgaggaatgatgaaggaataatgattgaatgaaggggagtggaagtagtgacgtttaatgaggaaacattcatgtggat |
588 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10402059 |
gtaatcacataagatgttacgaggaatgatgaaggaataatgattaaatgaaggggagtggaagtagtgacgtttaatgaggaaacattcatgtggat |
10402156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 321 - 587
Target Start/End: Original strand, 10429343 - 10429615
Alignment:
| Q |
321 |
acatccatcttcaacattctatctccttcaaagttgactctgctcatatgcctagcattgtcacccataagaaatagagcgtcttccaacgcttcatcag |
420 |
Q |
| |
|
|||||||||| ||| ||||||| |||||||||||||||| || |||||| |||||| | ||||||||||||| ||| | ||||||||| |||||| || |
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|
| T |
10429343 |
acatccatctccaatattctatatccttcaaagttgactgtgttcatatacctagcgtactcacccataagaagtagggtttcttccaacacttcatgag |
10429442 |
T |
|
| Q |
421 |
gaag---caccga---gagagcgttgcgtaacaaggtattggacaaactatctgaatgcacggattcaaaattgtcgtaatcacataagatgttacgagg |
514 |
Q |
| |
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|||| |||||| || || ||| || || ||||||| ||| ||||||||| || |||||||||||| | |||||||||||||||||||||| ||| |
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| T |
10429443 |
gaagatccaccgacaagaaagtgttacgcaaaaaggtataggataaactatcttgatccacggattcaaactcatcgtaatcacataagatgttaccagg |
10429542 |
T |
|
| Q |
515 |
aatgatgaaggaataatgattgaatgaaggggagtggaagtagtgacgtttaatgaggaaacattcatgtgga |
587 |
Q |
| |
|
||| | |||| ||| || |||||||||| ||||| |||| |||| |||||||||||||||||||||||||| |
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|
| T |
10429543 |
aataaggaagtcatagtggttgaatgaagtcgagtgaaagtggtgaagtttaatgaggaaacattcatgtgga |
10429615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 57 - 191
Target Start/End: Original strand, 10381345 - 10381479
Alignment:
| Q |
57 |
attttaaaatgtgatcattgaatttgggaacgacacattgggcagggatattgtggattggtaatgtcacaatgcataatccaattagtaacacaatgct |
156 |
Q |
| |
|
|||| ||||| |||||||||||||| ||||||||||| |||||||| |||| | ||||| ||||| ||| ||||||| ||| || |||||| || | |
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|
| T |
10381345 |
atttgaaaatatgatcattgaatttcggaacgacacaatgggcaggaatataatcgattgctaatgcaacactgcataagccaccgagcaacacattgtt |
10381444 |
T |
|
| Q |
157 |
catggaaaacatgcatgcacttggtacgaacaatg |
191 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
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| T |
10381445 |
gatggaaaacatgcatgcacttggtacgaacaatg |
10381479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 146 - 240
Target Start/End: Original strand, 10429132 - 10429226
Alignment:
| Q |
146 |
aacacaatgctcatggaaaacatgcatgcacttggtacgaacaatgtgttcttcttctgatccacaacaaaattcctccaaacaaattgcacatt |
240 |
Q |
| |
|
||||||||| ||||| |||| |||||| ||||||||||||| ||||||| | ||||||||||| ||||||||||||||||||||||| ||||| |
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|
| T |
10429132 |
aacacaatgttcatgaaaaaaatgcatacacttggtacgaataatgtgtggtacttctgatccatcacaaaattcctccaaacaaattgaacatt |
10429226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 10396690 - 10396730
Alignment:
| Q |
13 |
attctggactaaattcctttattctgcaaacacatcaaatt |
53 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10396690 |
attctggactaaattcctttattctgcaaacacatcaaatt |
10396730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 10406910 - 10406950
Alignment:
| Q |
13 |
attctggactaaattcctttattctgcaaacacatcaaatt |
53 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10406910 |
attctggactaaattcctttattctgcaaacacatcaaatt |
10406950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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