View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15296_high_46 (Length: 256)

Name: NF15296_high_46
Description: NF15296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15296_high_46
NF15296_high_46
[»] chr2 (1 HSPs)
chr2 (81-239)||(40042235-40042390)
[»] chr8 (3 HSPs)
chr8 (14-64)||(11904858-11904908)
chr8 (15-66)||(31774727-31774778)
chr8 (14-64)||(12142086-12142136)
[»] chr7 (2 HSPs)
chr7 (14-64)||(28713682-28713732)
chr7 (14-64)||(38349586-38349636)
[»] chr3 (3 HSPs)
chr3 (22-64)||(29915094-29915136)
chr3 (22-64)||(29964247-29964289)
chr3 (14-64)||(36674646-36674696)
[»] chr6 (4 HSPs)
chr6 (14-75)||(34792778-34792839)
chr6 (17-64)||(16717995-16718042)
chr6 (14-63)||(12748217-12748266)
chr6 (15-63)||(29429590-29429638)
[»] chr4 (1 HSPs)
chr4 (15-64)||(51579325-51579374)
[»] chr1 (1 HSPs)
chr1 (14-63)||(29731194-29731243)


Alignment Details
Target: chr2 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 81 - 239
Target Start/End: Complemental strand, 40042390 - 40042235
Alignment:
Q  81 gtcatcacaatgttttgtatttatctgctgctgctgctaacaaagtaataataatatatctatcgtacacaacttcactatcaatagtgtccaccaaact 180  Q
    |||||||||||||||| ||||||||||||||||||   ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  40042390 gtcatcacaatgttttctatttatctgctgctgct---aacaaagtaataataatatatctattgtacacaacttcactatcaatagtgtccaccaaact 40042294  T
Q  181 cactttgcaagttcgtgacagatcctattggattgaacctaggaatcatctcttgttgc 239  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40042293 cactttgcaagttcgtgacagatcctattggattgaacctaggaatcatctcttgttgc 40042235  T

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Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 14 - 64
Target Start/End: Complemental strand, 11904908 - 11904858
Alignment:
Q  14 atatgtgagtgtacaagtggtatatgccacataaggtagtgtatgtatcac 64  Q
    ||||||| |||||||||||||||||||||| |||||| || ||||||||||    
T  11904908 atatgtgggtgtacaagtggtatatgccacctaaggtggtttatgtatcac 11904858  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 15 - 66
Target Start/End: Complemental strand, 31774778 - 31774727
Alignment:
Q  15 tatgtgagtgtacaagtggtatatgccacataaggtagtgtatgtatcacca 66  Q
    ||||||||||||||||||||| ||| ||| |||||| || ||||||||||||    
T  31774778 tatgtgagtgtacaagtggtacatgtcacctaaggtggtctatgtatcacca 31774727  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 64
Target Start/End: Complemental strand, 12142136 - 12142086
Alignment:
Q  14 atatgtgagtgtacaagtggtatatgccacataaggtagtgtatgtatcac 64  Q
    |||||||  ||||||||||||||||||||| |||||| || ||||||||||    
T  12142136 atatgtggatgtacaagtggtatatgccacctaaggtggtttatgtatcac 12142086  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 14 - 64
Target Start/End: Complemental strand, 28713732 - 28713682
Alignment:
Q  14 atatgtgagtgtacaagtggtatatgccacataaggtagtgtatgtatcac 64  Q
    ||||||| |||||||||||||||||||||| |||||| || ||||||||||    
T  28713732 atatgtgggtgtacaagtggtatatgccacctaaggtggtttatgtatcac 28713682  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 64
Target Start/End: Original strand, 38349586 - 38349636
Alignment:
Q  14 atatgtgagtgtacaagtggtatatgccacataaggtagtgtatgtatcac 64  Q
    ||||||| |||||||||||||||||||||| |||| | || ||||||||||    
T  38349586 atatgtgggtgtacaagtggtatatgccacctaagatggtttatgtatcac 38349636  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 22 - 64
Target Start/End: Original strand, 29915094 - 29915136
Alignment:
Q  22 gtgtacaagtggtatatgccacataaggtagtgtatgtatcac 64  Q
    ||||||||||||||||||||||||||||| || ||||||||||    
T  29915094 gtgtacaagtggtatatgccacataaggtggtctatgtatcac 29915136  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 22 - 64
Target Start/End: Original strand, 29964247 - 29964289
Alignment:
Q  22 gtgtacaagtggtatatgccacataaggtagtgtatgtatcac 64  Q
    ||||||||||||||||||||||||||||| || ||||||||||    
T  29964247 gtgtacaagtggtatatgccacataaggtggtctatgtatcac 29964289  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 14 - 64
Target Start/End: Original strand, 36674646 - 36674696
Alignment:
Q  14 atatgtgagtgtacaagtggtatatgccacataaggtagtgtatgtatcac 64  Q
    |||||||||||||||||||||||||| ||| |||||| || ||||||||||    
T  36674646 atatgtgagtgtacaagtggtatatgtcacctaaggtggtttatgtatcac 36674696  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 75
Target Start/End: Original strand, 34792778 - 34792839
Alignment:
Q  14 atatgtgagtgtacaagtggtatatgccacataaggtagtgtatgtatcaccaatctaaata 75  Q
    ||||||| |||||||||||||| ||||||| |||||| || |||||||||| | ||||||||    
T  34792778 atatgtgggtgtacaagtggtacatgccacctaaggtggtctatgtatcactactctaaata 34792839  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 17 - 64
Target Start/End: Complemental strand, 16718042 - 16717995
Alignment:
Q  17 tgtgagtgtacaagtggtatatgccacataaggtagtgtatgtatcac 64  Q
    |||| |||||||||||||||||||||| |||||| || ||||||||||    
T  16718042 tgtgggtgtacaagtggtatatgccacctaaggtggtttatgtatcac 16717995  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 14 - 63
Target Start/End: Complemental strand, 12748266 - 12748217
Alignment:
Q  14 atatgtgagtgtacaagtggtatatgccacataaggtagtgtatgtatca 63  Q
    ||||||| |||||||||||||||||||||| ||| || || |||||||||    
T  12748266 atatgtgggtgtacaagtggtatatgccacctaaagtggtttatgtatca 12748217  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 63
Target Start/End: Complemental strand, 29429638 - 29429590
Alignment:
Q  15 tatgtgagtgtacaagtggtatatgccacataaggtagtgtatgtatca 63  Q
    |||||| |||||||||||||| ||||||| ||||||||| | |||||||    
T  29429638 tatgtgggtgtacaagtggtacatgccacctaaggtagtctgtgtatca 29429590  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 15 - 64
Target Start/End: Complemental strand, 51579374 - 51579325
Alignment:
Q  15 tatgtgagtgtacaagtggtatatgccacataaggtagtgtatgtatcac 64  Q
    |||||| |||||||||||||| ||||||| |||||| || ||||||||||    
T  51579374 tatgtgggtgtacaagtggtacatgccacctaaggtggtctatgtatcac 51579325  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 14 - 63
Target Start/End: Complemental strand, 29731243 - 29731194
Alignment:
Q  14 atatgtgagtgtacaagtggtatatgccacataaggtagtgtatgtatca 63  Q
    ||||||| |||||| ||||||||||||||| |||||| || |||||||||    
T  29731243 atatgtgggtgtactagtggtatatgccacctaaggtggtttatgtatca 29731194  T

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