View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15296_high_48 (Length: 252)
Name: NF15296_high_48
Description: NF15296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15296_high_48 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 13 - 252
Target Start/End: Original strand, 34103098 - 34103337
Alignment:
| Q |
13 |
cagagacaacgcggagatcattaaacactatataacatgattagagaatcacatataattagataagataatgttcgaatgttgtagacttgtagtagct |
112 |
Q |
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| T |
34103098 |
cagagacaacgcggagatcattaaacactatataacatgattagagaatcacatataattagataagataatgttcgaatgttgtagacttgtagtagct |
34103197 |
T |
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| Q |
113 |
gttattcaaattaagcagtacgtagtatgtacatgtccttattcaaaccaggtgttatgtttgtgcgtgttatttaaatttgtcattatccaaattagca |
212 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34103198 |
gttattcaaattaagcagtatgtagtatgtacatgtccttattcaaaccaggtgttatgtttgtgcgtgttatttaaatttgtcattatccaaattagca |
34103297 |
T |
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| Q |
213 |
ttcaagctaacttttaatctgttatgttgtaccctatatt |
252 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
34103298 |
ttcaagctaacttttaatctgttatgttgtaccctatatt |
34103337 |
T |
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