View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15296_high_54 (Length: 237)
Name: NF15296_high_54
Description: NF15296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15296_high_54 |
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Alignment Details
Target: chr8 (Bit Score: 148; Significance: 3e-78; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 64 - 219
Target Start/End: Complemental strand, 15293632 - 15293477
Alignment:
| Q |
64 |
cacataagctttgagaaaaagggaaaaatggatttcaatttgaactggcttaaaacaaaagcaaaggcttccaaaacaaatgcagctcatcatgaacata |
163 |
Q |
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| T |
15293632 |
cacataagctttgagaaaaagggaaaaatgggtttcaatttgaactagcttaaaacaaaagcaaaggcttccaaaacaaatgcagctcatcatgaacata |
15293533 |
T |
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| Q |
164 |
aattcaatgaaaacgtgaatggaaactaaaacaagaatgcaaaagcgagctgataa |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15293532 |
aattcaatgaaaacgtgaatggaaactaaaacaagaatgcaaaagcgagctgataa |
15293477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 64 - 219
Target Start/End: Complemental strand, 15474001 - 15473846
Alignment:
| Q |
64 |
cacataagctttgagaaaaagggaaaaatggatttcaatttgaactggcttaaaacaaaagcaaaggcttccaaaacaaatgcagctcatcatgaacata |
163 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15474001 |
cacataagctttgagaaaaagggaaaaatgggtttcaatttgaactagcttaaaacaaaagcaaaggcttccaaaacaaatgcagctcatcatgaacata |
15473902 |
T |
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| Q |
164 |
aattcaatgaaaacgtgaatggaaactaaaacaagaatgcaaaagcgagctgataa |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15473901 |
aattcaatgaaaacgtgaatggaaactaaaacaagaatgcaaaagcgagctgataa |
15473846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 96 - 219
Target Start/End: Complemental strand, 35941040 - 35940916
Alignment:
| Q |
96 |
tttcaatttgaactggcttaaaacaaaagcaaaggcttccaaaacaaa-tgcagctcatcatgaacataaattcaatgaaaacgtgaatggaaactaaaa |
194 |
Q |
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| T |
35941040 |
tttcaatttgaaccagcttaaaacaaaagcaaaggcttccaaaaaaaaatgcagctcatcatgaacataaattcaatgaaaatgtgaatggaaactaaaa |
35940941 |
T |
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| Q |
195 |
caagaatgcaaaagcgagctgataa |
219 |
Q |
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|||||||||||| ||| ||||||| |
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| T |
35940940 |
taagaatgcaaaatcgaactgataa |
35940916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 140; Significance: 2e-73; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 64 - 219
Target Start/End: Original strand, 16389594 - 16389748
Alignment:
| Q |
64 |
cacataagctttgagaaaaagggaaaaatggatttcaatttgaactggcttaaaacaaaagcaaaggcttccaaaacaaatgcagctcatcatgaacata |
163 |
Q |
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||||||||||||||||||||||||||| ||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16389594 |
cacataagctttgagaaaaagggaaaa-tgggtttcaatttgaactagcttaaaacaaaagcaaaggcttccaaaacaaatgcagctcatcatgaacata |
16389692 |
T |
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| Q |
164 |
aattcaatgaaaacgtgaatggaaactaaaacaagaatgcaaaagcgagctgataa |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16389693 |
aattcaatgaaaacgtgaatggaaactaaaacaagaatgcaaaagcgagctgataa |
16389748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 131 - 219
Target Start/End: Original strand, 38457452 - 38457540
Alignment:
| Q |
131 |
cttccaaaacaaatgcagctcatcatgaacataaattcaatgaaaacgtgaatggaaactaaaacaagaatgcaaaagcgagctgataa |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
38457452 |
cttccaaaacaaatgcagctcatcatgaacataaattcaatgaaaacgtgaatggaaactaaaacaagaatgcaaaagcgaactgataa |
38457540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 64 - 140
Target Start/End: Original strand, 38456495 - 38456571
Alignment:
| Q |
64 |
cacataagctttgagaaaaagggaaaaatggatttcaatttgaactggcttaaaacaaaagcaaaggcttccaaaac |
140 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||| | |||||||||||||||||||||||||||||| |
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| T |
38456495 |
cacataagctttgagaaaaagggaaaaatgggtttcaatttgaattagcttaaaacaaaagcaaaggcttccaaaac |
38456571 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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