View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15296_high_55 (Length: 236)
Name: NF15296_high_55
Description: NF15296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15296_high_55 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 169; Significance: 9e-91; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 14610674 - 14610858
Alignment:
| Q |
1 |
ttatcaaattggatctaataataagatcatggatgacccaaaagtgctatcgatgaaggaggttgttgcacgcgagactgcacagctgttggagcagcag |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| |
|
|
| T |
14610674 |
ttatcaaattggatctaataataagatcatggatgacccgaaagtgctatcgatgaaggaggttgttgcacgtgagactgcacagctgttggaacagcag |
14610773 |
T |
|
| Q |
101 |
aaacgtctctcagttcgcgaccttgctagtaaatttgagaagggtttggcagctgctgctaagttatctgaagaggtcatacaca |
185 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14610774 |
aaacgtctctcagttcgcgaccttgcgagtaaatttgagaagggtttggcagctgctgctaagttatctgaagaggtcatacaca |
14610858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 31 - 177
Target Start/End: Complemental strand, 38591897 - 38591751
Alignment:
| Q |
31 |
ggatgacccaaaagtgctatcgatgaaggaggttgttgcacgcgagactgcacagctgttggagcagcagaaacgtctctcagttcgcgaccttgctagt |
130 |
Q |
| |
|
||||||||| |||||| |||| |||||||||||| |||| || |||||||| | ||||||| ||||| || |||||||||||||| |||||||||||| |
|
|
| T |
38591897 |
ggatgaccctaaagtgttatctatgaaggaggttattgcgcgtgagactgctatgttgttggaccagcataatcgtctctcagttcgtgaccttgctagt |
38591798 |
T |
|
| Q |
131 |
aaatttgagaagggtttggcagctgctgctaagttatctgaagaggt |
177 |
Q |
| |
|
|||||||||||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
38591797 |
aaatttgagaagggtttggctgcggctgctaagttatctgaagaggt |
38591751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University