View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15296_high_60 (Length: 226)
Name: NF15296_high_60
Description: NF15296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15296_high_60 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 7 - 226
Target Start/End: Complemental strand, 53789939 - 53789720
Alignment:
| Q |
7 |
ggtgggaatggtggtcgacgggttatgcagtaagtgattcagtgggaaggttaagacacggcaatccgggcgatcatattggactagtgctaggttcctg |
106 |
Q |
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| T |
53789939 |
ggtgggaatggtggtcgacgggttatgcagtaagtgattcagtgggaaggttaagacacggcaatccgggcgatcatattggactagtgctaggttcctg |
53789840 |
T |
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| Q |
107 |
ttcggcgttgatcgctgaaggtgcactgtgacgaatttgggatcggagatgagggaattccaagacttattcaaatactttaattgcaacaaagatttca |
206 |
Q |
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| T |
53789839 |
ttcggcgttgatagctgaaggtgcaatttgacgaatttgggatcggagatgagggaattccaagacttattcacacactttaattgcaacaaagatttca |
53789740 |
T |
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| Q |
207 |
ctggaagcaatgatagaact |
226 |
Q |
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| T |
53789739 |
ctggaagcaatgatagaact |
53789720 |
T |
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