View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15296_high_61 (Length: 220)
Name: NF15296_high_61
Description: NF15296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15296_high_61 |
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Alignment Details
Target: chr5 (Bit Score: 124; Significance: 6e-64; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 16 - 201
Target Start/End: Complemental strand, 3083795 - 3083598
Alignment:
| Q |
16 |
aatatggaagaatggaatattcatttactagtaaaagaatgcacattgcttannnnnnnggatccgtaaaatgatttatatatatat------------g |
103 |
Q |
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| T |
3083795 |
aatatggaagaatggaatattcatttactagtaaaagaatgcacattgcttatttttttggatccatgaaatgatttatatatatatatatatatatatg |
3083696 |
T |
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| Q |
104 |
aagaacagaagaagaattataagatgaaaacctttatgtgttgtaaacatgatcctatgaacggtggcatgcaaaagaagagtgattgtgttggtgtt |
201 |
Q |
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| T |
3083695 |
aagaacagaagaagaattataagatgaaaacctttatgtgttgtaaacaagatcctatgaacggtggcatgcaaaagaagagtgattgtgttggtgtt |
3083598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 127 - 201
Target Start/End: Complemental strand, 3092112 - 3092038
Alignment:
| Q |
127 |
atgaaaacctttatgtgttgtaaacatgatcctatgaacggtggcatgcaaaagaagagtgattgtgttggtgtt |
201 |
Q |
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| T |
3092112 |
atgaaaacctttgctttttgtaaacaagattctatgaacggtggcatgcaaaagaagagtgattgtgttggtgtt |
3092038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 31 - 64
Target Start/End: Complemental strand, 3092196 - 3092163
Alignment:
| Q |
31 |
aatattcatttactagtaaaagaatgcacattgc |
64 |
Q |
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| T |
3092196 |
aatattcatttgctagtaaaagaatgcacattgc |
3092163 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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