View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15296_high_7 (Length: 583)
Name: NF15296_high_7
Description: NF15296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15296_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 407; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 134 - 564
Target Start/End: Original strand, 47517102 - 47517532
Alignment:
| Q |
134 |
gatagattggcgacaagagataatttgttcaaaaggggcatcttaacctcaccacatcaaaggttttgtgtgtactgcttcgcagaaccagaaaacacgc |
233 |
Q |
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| T |
47517102 |
gatagattggcgacaagagataatttgttcaaaaggggcatcttaacctcaccacatcaaaggttttgtgtgtgctgcttcgcagaaccagaaaacacgc |
47517201 |
T |
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| Q |
234 |
aacacctattccttcgatgtccatttagcattagagtttgggaccaaatatattgttggattggagtttcctttgttcaatatcatgaaacaatttcaca |
333 |
Q |
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| T |
47517202 |
aacacctattccttcgatgcccatttagcgttagagtttgggaccaaatatattgttggattggagtttcctttgttcaatatcatgaaacagtttcaca |
47517301 |
T |
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| Q |
334 |
cttcttacaacacggagcactaaagagacaaaaaagtagcaggaggttcgagtttctaccgtgggcggctacagtctagtgtatacggctgcgtcagaac |
433 |
Q |
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| T |
47517302 |
cttcttacaacacggagcactaaagagacgaaaaagtagcaggaggttcgagtttctaccgcgggcggctacagtctagtgtatacggctgcgtcagaac |
47517401 |
T |
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| Q |
434 |
tacattctctttaacggaaaattaatcgatgtaaactgcatggtgtctccgattagaattacgtcatggaattggttattaggttgtagggggaacaagg |
533 |
Q |
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| T |
47517402 |
tacattctctttaacggaaaattaatcgatgtaaactgcatggtgtctccgattagaattacgtcatggaattggttattaggttgtagggggaacaagg |
47517501 |
T |
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| Q |
534 |
aggggatcccttacttgattggcgtgtaagt |
564 |
Q |
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| T |
47517502 |
aggggatcccttacttgattggcgtgtaagt |
47517532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 19 - 132
Target Start/End: Original strand, 47516915 - 47517028
Alignment:
| Q |
19 |
ggcagaaaatatagcagattcatgggtttcggctctggatccaccgtgcagttttacggtaaaatcatattactcattgctgtccaaggttagtttttca |
118 |
Q |
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| T |
47516915 |
ggcagaaaatatagcagattcatgggtttcggctctggatccaccgtgcagttttacggtaaaatcatattactcattgctgtctaaggttagtttttca |
47517014 |
T |
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| Q |
119 |
gcagaaaatatgga |
132 |
Q |
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| T |
47517015 |
gcagaaaatatgga |
47517028 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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