View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15296_high_9 (Length: 548)
Name: NF15296_high_9
Description: NF15296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15296_high_9 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 436; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 1 - 533
Target Start/End: Complemental strand, 23797707 - 23797167
Alignment:
| Q |
1 |
ccattaattttaagaaactcaacggtaggatggatttagattgcttgcggtcacaatcccacacagttaacacgaggctgactttatgaatgcatgaaat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
23797707 |
ccattaattttaagaaactcaacggtaggatggatttagattgcttgcggtcacaatcccacacagttaacacgaggctgactttgtgaatgcatgaaat |
23797608 |
T |
|
| Q |
101 |
tgtgactgcagctgagtccaaatccgaaaggatagg----acatagaataattgaatgatttacacatgctataacaagatttctctattccacatttgt |
196 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23797607 |
tgtgactgcagc-gagtccaaatccgaaaggataggatatatatagaataattgaatgatttacacatgctataacaagatttctctattccacatttgt |
23797509 |
T |
|
| Q |
197 |
ttctcttgtcacaaagggtcgcgcataataatcacaaattag-----tattaagttctttcctttcacaaaaaatggatcattgacaccttactctttta |
291 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23797508 |
ttctcttgtcacaaagggtcgcgcataataatcacaaattagtatcttattaagttctttcctttcacaaaaaatggatcattgacaccttactctttta |
23797409 |
T |
|
| Q |
292 |
acggatttnnnnnnnntgtcatattaatgctaagcattgttttctaaatacaacatttttaatcaagtttcttgctnnnnnnngaaaccagagaaggctg |
391 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
23797408 |
acggatttaaaaaaaatgtcatattaatgctaagcattgttttctaaatacaacatttttaatcaagtttcttgctaagaaaagaaaccagagaaggctg |
23797309 |
T |
|
| Q |
392 |
aatgtttcatacttggcaatgtctcttatttcatttttcattcgtatatcttgcttgctccctttaaatcgtaatcctaactctaaatacaaatgtcaat |
491 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
23797308 |
aatgtttcatacttggcaatgtctcttatttcgtttttcattcgtatatcttgcttgctccctttaaatcctaatcctaactctaaatacaaatgtcaat |
23797209 |
T |
|
| Q |
492 |
gtttgcagccgaagtggaacaatgcacttctggagatgttta |
533 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23797208 |
gtttgcagccgaagtggaacaatgcacttctggagatgttta |
23797167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University