View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15296_low_11 (Length: 488)
Name: NF15296_low_11
Description: NF15296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15296_low_11 |
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| [»] scaffold0234 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 400; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 1 - 431
Target Start/End: Original strand, 12699511 - 12699942
Alignment:
| Q |
1 |
tgcaacatgtggattcgctagtttcaagtcttccaataaatgaacaacacaatcaattacctgagcaactgtgttatgatatttcttgccaaagcttaag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12699511 |
tgcaacatgtggattcgctagtttcaagtcttccaataaatgaacaacacaatcaattacctgagcaactgtgttatgatatttcttgccaaagcttaag |
12699610 |
T |
|
| Q |
101 |
gttactctgtttccgaaggcttcaaagagtggaagcaaagctttgggaattttcgctctatagctcatgtaaaagatgaaacactactagaaaatttaca |
200 |
Q |
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|||||| ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12699611 |
gttactgtgtttccaaaggcttcaaagagtggaagcaaggctttgggaattttcgctctatagctcatgtaaaagatgaaacactactagaaaatttaca |
12699710 |
T |
|
| Q |
201 |
tttgacatcagggcattcacatcagtggagaaatacttgaagggaaagaactttggagaaggttttcacatcagctgaggaaatgcctaagaggaataat |
300 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
12699711 |
tttgacatcagggctttcacatcagtggagaaatacttgaagggaaagaactttggagaaggttttcacaccagctgaggaaatgcctaagaggaataat |
12699810 |
T |
|
| Q |
301 |
agatactaaatagttttcacatctgtggaact-aatgactgagggaaaagataaacgcgatgacaatttcgtaatattagtgctctttacaacaaacatt |
399 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
12699811 |
agatactaaatagttttcacatctgtggaactaaatgactgagggaaaagataaacgcggtgacaatttcgtaatattagtgctctttacaacaaacatt |
12699910 |
T |
|
| Q |
400 |
gttcacatcagtgaatacagtcagccgaaggg |
431 |
Q |
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| T |
12699911 |
gttcacatcagtgaatacagtcagccgaaggg |
12699942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 248 - 348
Target Start/End: Complemental strand, 2598768 - 2598668
Alignment:
| Q |
248 |
gaactttggagaaggttttcacatcagctgaggaaatgcctaagaggaataatagatactaaatagttttcacatctgtggaactaatgactgagggaaa |
347 |
Q |
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|||||||| |||| | ||| |||||| |||||||||| || | |||| |||| || ||||| |||||| ||||| |||||||||||| ||||||||| |
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| T |
2598768 |
gaactttgatgaagttgttcccatcagttgaggaaatgactgaagggaaaaataaatgctaaagagttttgacatcagtggaactaatgcatgagggaaa |
2598669 |
T |
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| Q |
348 |
a |
348 |
Q |
| |
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| T |
2598668 |
a |
2598668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 181 - 249
Target Start/End: Original strand, 51741416 - 51741484
Alignment:
| Q |
181 |
acactactagaaaatttacatttgacatcagggcattcacatcagtggagaaatacttgaagggaaaga |
249 |
Q |
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| T |
51741416 |
acactactagaaaaaagacatttgacatcagggttttcacatcagtgcaaaaatacatgagggtaaaga |
51741484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0234 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0234
Description:
Target: scaffold0234; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 231 - 380
Target Start/End: Original strand, 5049 - 5199
Alignment:
| Q |
231 |
aaatacttgaagggaaaga-actttggagaaggttttcacatcagctgaggaaatgcctaagaggaataatagatactaaatagttttcacatctgtgga |
329 |
Q |
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|||||| ||| |||||||| |||||||| |||||||||| |||| ||| |||||| || || |||| | |||| | || |||||| ||||| ||||| |
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| T |
5049 |
aaatacctgatgggaaagatactttggatgaggttttcacttcaggtgaagaaatggctgaggggaaaagtagaagcccaagagttttgacatcagtgga |
5148 |
T |
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| Q |
330 |
actaatgactgagggaaaagataaacgcgatgacaatttcgtaatattagt |
380 |
Q |
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||||||| |||||| ||| ||||||||| || |||||| ||||||||||| |
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| T |
5149 |
actaatgcatgaggggaaacataaacgcggtggcaattttgtaatattagt |
5199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 182 - 247
Target Start/End: Original strand, 24167159 - 24167224
Alignment:
| Q |
182 |
cactactagaaaatttacatttgacatcagggcattcacatcagtggagaaatacttgaagggaaa |
247 |
Q |
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|||||||||||||| ||||||| ||| |||| ||||||||||||||||||||| ||| |||||| |
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| T |
24167159 |
cactactagaaaatatacatttaacaatagggatttcacatcagtggagaaatacatgaggggaaa |
24167224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 251 - 380
Target Start/End: Complemental strand, 9809556 - 9809427
Alignment:
| Q |
251 |
ctttggagaaggttttcacatcagctgaggaaatgcctaagaggaataatagatactaaatagttttcacatctgtggaactaatgactgagggaaaaga |
350 |
Q |
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||||||| |||||||| || |||| ||| |||||| || || |||| |||||| | | |||||| |||| |||||||||||| |||||| ||| | |
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| T |
9809556 |
ctttggacaaggttttgacttcaggtgaagaaatggctgaggggaaaaatagaagcccaggagttttgacataagtggaactaatgcatgaggggaaaca |
9809457 |
T |
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| Q |
351 |
taaacgcgatgacaatttcgtaatattagt |
380 |
Q |
| |
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|||||||| || |||||||||||||||||| |
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| T |
9809456 |
taaacgcggtggcaatttcgtaatattagt |
9809427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 182 - 226
Target Start/End: Original strand, 31713445 - 31713489
Alignment:
| Q |
182 |
cactactagaaaatttacatttgacatcagggcattcacatcagt |
226 |
Q |
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| T |
31713445 |
cactactagaaaatatacatttgacatcagggttttcacatcagt |
31713489 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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