View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15296_low_16 (Length: 473)
Name: NF15296_low_16
Description: NF15296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15296_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 200; Significance: 1e-109; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 6048420 - 6048180
Alignment:
| Q |
1 |
ttgtttgcttggctaaggactttaggggctctatgatgtattcattaaggtccaggcctcctcctgtttgcattttaatttttcttgctttgatgnnnnn |
100 |
Q |
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| T |
6048420 |
ttgtttgcttggctaaggactttaggggctctatgatgtatt----aaggtccaggcctcctcctgtttgcattttaatttttcttgctttgatgaaaaa |
6048325 |
T |
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| Q |
101 |
nnncaaagtagaaaatacaacattggatttaattagtggtccagatttttagaaatcaagacgagaatatttacacatactccatggtaaatacaacatt |
200 |
Q |
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| T |
6048324 |
aaacaaagtagaaaatacaacattggatttaattagtggtccagatttttagaaatcaagacaagaatatttacacatactccatggtaaatacaacatt |
6048225 |
T |
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| Q |
201 |
ggataatgtgtccttatagtacttcaatggtaacttttcacaagt |
245 |
Q |
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| T |
6048224 |
ggataatgtgtccttatagtacttcaatggtaacttttcacaagt |
6048180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 321 - 456
Target Start/End: Complemental strand, 6047917 - 6047782
Alignment:
| Q |
321 |
ataagtgtgtagaaggaagttaaaggtcttattgccctcatcctaaaatttaccctaacataagagacagttgttgatcgtcttacaaatgttgctccac |
420 |
Q |
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| T |
6047917 |
ataagtgtgtagaacgaagttaaagatcctattgccctcaccctaaaatttaccttaacataagagaaagtggttgatcgtcttacaaatgttgctccac |
6047818 |
T |
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| Q |
421 |
cggtgaatgccagctgccctcgccttaaatgtcacc |
456 |
Q |
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| T |
6047817 |
cggtgaaggacagctgccctcgccttaaatgtcacc |
6047782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 46 - 94
Target Start/End: Complemental strand, 35553992 - 35553943
Alignment:
| Q |
46 |
taaggtccaggcctcctcctg-tttgcattttaatttttcttgctttgat |
94 |
Q |
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| T |
35553992 |
taaggttcaggcctcctcctgatttgcattttaatttttcttgctttgat |
35553943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 46 - 94
Target Start/End: Complemental strand, 28101506 - 28101457
Alignment:
| Q |
46 |
taaggtccaggcctcctcctg-tttgcattttaatttttcttgctttgat |
94 |
Q |
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| T |
28101506 |
taaggttcaggcctcctcctgctttgcattttaatttttcttgctttgat |
28101457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 46 - 94
Target Start/End: Complemental strand, 3248262 - 3248213
Alignment:
| Q |
46 |
taaggtccaggcctcctcctg-tttgcattttaatttttcttgctttgat |
94 |
Q |
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|||||| ||||||||||||| |||||||||||||||||||||||||||| |
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| T |
3248262 |
taaggttcaggcctcctcctactttgcattttaatttttcttgctttgat |
3248213 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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