View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15296_low_18 (Length: 428)

Name: NF15296_low_18
Description: NF15296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15296_low_18
NF15296_low_18
[»] chr5 (2 HSPs)
chr5 (103-161)||(32108009-32108068)
chr5 (103-151)||(12237025-12237073)
[»] chr8 (3 HSPs)
chr8 (358-392)||(9195877-9195911)
chr8 (346-392)||(22593935-22593981)
chr8 (97-157)||(40464556-40464616)
[»] chr1 (3 HSPs)
chr1 (99-153)||(7010054-7010108)
chr1 (125-158)||(328548-328581)
chr1 (348-392)||(8711029-8711074)
[»] chr7 (1 HSPs)
chr7 (359-392)||(23311579-23311612)
[»] chr3 (3 HSPs)
chr3 (348-390)||(24486232-24486274)
chr3 (350-390)||(31996945-31996985)
chr3 (126-158)||(42313976-42314008)
[»] chr4 (1 HSPs)
chr4 (360-392)||(32150039-32150071)


Alignment Details
Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 103 - 161
Target Start/End: Complemental strand, 32108068 - 32108009
Alignment:
Q  103 tcttatatatagggacacaactttttta-taaagtagtcttataaaaagggacggagaga 161  Q
    |||||||| |||||||| |||||||||  |||||||||||||||||||||||||||||||    
T  32108068 tcttatatttagggacaaaactttttttgtaaagtagtcttataaaaagggacggagaga 32108009  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 103 - 151
Target Start/End: Complemental strand, 12237073 - 12237025
Alignment:
Q  103 tcttatatatagggacacaacttttttataaagtagtcttataaaaagg 151  Q
    |||||||| ||  |||| |||||||||||||||||||||| ||||||||    
T  12237073 tcttatatttaacgacaaaacttttttataaagtagtcttgtaaaaagg 12237025  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 358 - 392
Target Start/End: Complemental strand, 9195911 - 9195877
Alignment:
Q  358 attatccatttacttttagcaaatggagaggatct 392  Q
    |||||||||||||||||||||||||||||||||||    
T  9195911 attatccatttacttttagcaaatggagaggatct 9195877  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 346 - 392
Target Start/End: Complemental strand, 22593981 - 22593935
Alignment:
Q  346 ttaccaaataacattatccatttacttttagcaaatggagaggatct 392  Q
    ||||||||| ||||| |||||||| ||| ||||||||||||||||||    
T  22593981 ttaccaaatgacattgtccatttattttaagcaaatggagaggatct 22593935  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 97 - 157
Target Start/End: Complemental strand, 40464616 - 40464556
Alignment:
Q  97 aaatagtcttatatatagggacacaacttttttataaagtagtcttataaaaagggacgga 157  Q
    ||||||||||| || | |||||| ||||||||| || ||| ||| ||||||||||||||||    
T  40464616 aaatagtcttagattttgggacaaaacttttttgtatagtggtcgtataaaaagggacgga 40464556  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 99 - 153
Target Start/End: Complemental strand, 7010108 - 7010054
Alignment:
Q  99 atagtcttatatatagggacacaacttttttataaagtagtcttataaaaaggga 153  Q
    |||||||||||| || |||||||| |||||| ||||||||||| |||||||||||    
T  7010108 atagtcttatatttatggacacaatttttttgtaaagtagtctcataaaaaggga 7010054  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 158
Target Start/End: Original strand, 328548 - 328581
Alignment:
Q  125 tttttataaagtagtcttataaaaagggacggag 158  Q
    ||||| ||||||||||||||||||||||||||||    
T  328548 tttttgtaaagtagtcttataaaaagggacggag 328581  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 348 - 392
Target Start/End: Original strand, 8711029 - 8711074
Alignment:
Q  348 accaaataacattatccatttactttt-agcaaatggagaggatct 392  Q
    ||||||| |||||||||||||| |||| ||||||||||||||||||    
T  8711029 accaaatgacattatccatttatttttaagcaaatggagaggatct 8711074  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 359 - 392
Target Start/End: Original strand, 23311579 - 23311612
Alignment:
Q  359 ttatccatttacttttagcaaatggagaggatct 392  Q
    ||||||||||||||||||||||||||||||||||    
T  23311579 ttatccatttacttttagcaaatggagaggatct 23311612  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 348 - 390
Target Start/End: Complemental strand, 24486274 - 24486232
Alignment:
Q  348 accaaataacattatccatttacttttagcaaatggagaggat 390  Q
    ||||||||||||||| |||||| ||||||||||| ||||||||    
T  24486274 accaaataacattattcatttatttttagcaaatagagaggat 24486232  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 350 - 390
Target Start/End: Original strand, 31996945 - 31996985
Alignment:
Q  350 caaataacattatccatttacttttagcaaatggagaggat 390  Q
    ||||| |||||||| |||||||||||||||||| |||||||    
T  31996945 caaatgacattatctatttacttttagcaaatgaagaggat 31996985  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 126 - 158
Target Start/End: Complemental strand, 42314008 - 42313976
Alignment:
Q  126 ttttataaagtagtcttataaaaagggacggag 158  Q
    |||| ||||||||||||||||||||||||||||    
T  42314008 ttttgtaaagtagtcttataaaaagggacggag 42313976  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 360 - 392
Target Start/End: Complemental strand, 32150071 - 32150039
Alignment:
Q  360 tatccatttacttttagcaaatggagaggatct 392  Q
    ||||||||||||||||||||||||||| |||||    
T  32150071 tatccatttacttttagcaaatggagatgatct 32150039  T

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