View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15296_low_20 (Length: 410)

Name: NF15296_low_20
Description: NF15296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15296_low_20
NF15296_low_20
[»] chr6 (3 HSPs)
chr6 (14-386)||(9150336-9150694)
chr6 (22-70)||(1501835-1501883)
chr6 (22-70)||(4441406-4441454)
[»] chr4 (4 HSPs)
chr4 (22-70)||(16742430-16742478)
chr4 (22-71)||(22721315-22721364)
chr4 (21-70)||(52733805-52733854)
chr4 (22-70)||(11055331-11055379)
[»] chr7 (5 HSPs)
chr7 (21-70)||(33171639-33171688)
chr7 (22-70)||(10618913-10618961)
chr7 (24-70)||(23227104-23227150)
chr7 (24-70)||(23236257-23236303)
chr7 (22-70)||(22075055-22075103)
[»] chr5 (3 HSPs)
chr5 (328-364)||(36513837-36513873)
chr5 (23-70)||(39414169-39414216)
chr5 (22-70)||(1840792-1840840)
[»] chr1 (2 HSPs)
chr1 (22-70)||(23915702-23915750)
chr1 (22-70)||(15306480-15306528)
[»] chr2 (3 HSPs)
chr2 (23-70)||(9963747-9963794)
chr2 (22-70)||(3409293-3409341)
chr2 (22-70)||(40680208-40680256)
[»] scaffold0025 (1 HSPs)
scaffold0025 (22-70)||(11377-11425)
[»] chr8 (1 HSPs)
chr8 (22-70)||(3307921-3307969)
[»] chr3 (1 HSPs)
chr3 (22-70)||(9505226-9505274)


Alignment Details
Target: chr6 (Bit Score: 282; Significance: 1e-158; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 14 - 386
Target Start/End: Complemental strand, 9150694 - 9150336
Alignment:
Q  14 atatacaaaactatatacaacttaagttcagctcatttatttaaggaacctaattttatgaaccaaattaaacaagtgctcttcaagctacctattaaaa 113  Q
    |||||||| |||||||||| |||||||||| |||||||||||||||              ||||||||||||||||||||||||||||||||||||||||    
T  9150694 atatacaagactatatacagcttaagttcaactcatttatttaagg--------------aaccaaattaaacaagtgctcttcaagctacctattaaaa 9150609  T
Q  114 ggaaattacatttgcaaataacaaagcaattgaagatatattggggccatatatatcctattatcacatatttggaactttccattgtgtgcgagaactt 213  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| ||||| |||||||    
T  9150608 ggaaattacatttgcaaataacaaagaaattgaagatatattggggccatatttatcctcttatcacatatttggaactttccattatgtgccagaactt 9150509  T
Q  214 tctgcatgaatcacctttctacagcttgcaaggaaatccattttattgtctgccacctgcagatacagattacaaaatatatcaagagcatacaaatttt 313  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  9150508 tctgcatgaatcacctttccacagcttgcaaggaaatccattttattgtctgccacctgcagatacagattacaaaatctatcaagagcatacaaatttt 9150409  T
Q  314 tcagatttcttcagagaagtttcttgagtaatcaaatttttcagagactttactcataatttcttcatcatca 386  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9150408 tcaggtttcttcagagaagtttcttgagtaatcaaatttttcagagactttactcataatttcttcatcatca 9150336  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 22 - 70
Target Start/End: Original strand, 1501835 - 1501883
Alignment:
Q  22 aactatatacaacttaagttcagctcatttatttaaggaacctaatttt 70  Q
    ||||||||||| ||||||||  |||||||||||||| |||| |||||||    
T  1501835 aactatatacagcttaagtttggctcatttatttaacgaacttaatttt 1501883  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 22 - 70
Target Start/End: Complemental strand, 4441454 - 4441406
Alignment:
Q  22 aactatatacaacttaagttcagctcatttatttaaggaacctaatttt 70  Q
    |||||||||||  | ||||||||||||||||||||| |||| |||||||    
T  4441454 aactatatacagttcaagttcagctcatttatttaacgaacttaatttt 4441406  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 22 - 70
Target Start/End: Complemental strand, 16742478 - 16742430
Alignment:
Q  22 aactatatacaacttaagttcagctcatttatttaaggaacctaatttt 70  Q
    |||||||||||||| ||||||||||||||||||||| |||| |||||||    
T  16742478 aactatatacaactcaagttcagctcatttatttaacgaacttaatttt 16742430  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 71
Target Start/End: Original strand, 22721315 - 22721364
Alignment:
Q  22 aactatatacaacttaagttcagctcatttatttaaggaacctaatttta 71  Q
    ||||||||| |||| ||||||| ||||||||||||| |||| ||||||||    
T  22721315 aactatatataactcaagttcaactcatttatttaacgaacttaatttta 22721364  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 70
Target Start/End: Complemental strand, 52733854 - 52733805
Alignment:
Q  21 aaactatatacaacttaagttcagctcatttatttaaggaacctaatttt 70  Q
    ||||||||||||| ||||||||| || |||||||||| |||| |||||||    
T  52733854 aaactatatacaatttaagttcaacttatttatttaacgaacttaatttt 52733805  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 22 - 70
Target Start/End: Complemental strand, 11055379 - 11055331
Alignment:
Q  22 aactatatacaacttaagttcagctcatttatttaaggaacctaatttt 70  Q
    ||||||||||| || |||||| |||||||||||||| |||| |||||||    
T  11055379 aactatatacagctcaagttcggctcatttatttaacgaacttaatttt 11055331  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 21 - 70
Target Start/End: Complemental strand, 33171688 - 33171639
Alignment:
Q  21 aaactatatacaacttaagttcagctcatttatttaaggaacctaatttt 70  Q
    ||||||||||||||| |||||| |||||||||||||| |||| |||||||    
T  33171688 aaactatatacaactcaagttcggctcatttatttaatgaacttaatttt 33171639  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 70
Target Start/End: Original strand, 10618913 - 10618961
Alignment:
Q  22 aactatatacaacttaagttcagctcatttatttaaggaacctaatttt 70  Q
    ||||||||||| || ||||||||||||||||||||| |||| |||||||    
T  10618913 aactatatacagctcaagttcagctcatttatttaacgaacttaatttt 10618961  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 24 - 70
Target Start/End: Complemental strand, 23227150 - 23227104
Alignment:
Q  24 ctatatacaacttaagttcagctcatttatttaaggaacctaatttt 70  Q
    |||||||||||| |||||| |||||||||||||| |||| |||||||    
T  23227150 ctatatacaactcaagttcggctcatttatttaacgaacttaatttt 23227104  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 24 - 70
Target Start/End: Complemental strand, 23236303 - 23236257
Alignment:
Q  24 ctatatacaacttaagttcagctcatttatttaaggaacctaatttt 70  Q
    |||||||||||| |||||| |||||||||||||| |||| |||||||    
T  23236303 ctatatacaactcaagttcggctcatttatttaacgaacttaatttt 23236257  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 22 - 70
Target Start/End: Original strand, 22075055 - 22075103
Alignment:
Q  22 aactatatacaacttaagttcagctcatttatttaaggaacctaatttt 70  Q
    |||||||||||  | ||||||||||||||||||||| |||| |||||||    
T  22075055 aactatatacagatcaagttcagctcatttatttaacgaacttaatttt 22075103  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 328 - 364
Target Start/End: Original strand, 36513837 - 36513873
Alignment:
Q  328 agaagtttcttgagtaatcaaatttttcagagacttt 364  Q
    |||||||||||||||||||||||| ||||||||||||    
T  36513837 agaagtttcttgagtaatcaaattcttcagagacttt 36513873  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 23 - 70
Target Start/End: Original strand, 39414169 - 39414216
Alignment:
Q  23 actatatacaacttaagttcagctcatttatttaaggaacctaatttt 70  Q
    |||||||| |||| ||||||||||||||||||||| |||| |||||||    
T  39414169 actatatataactcaagttcagctcatttatttaacgaacttaatttt 39414216  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 22 - 70
Target Start/End: Complemental strand, 1840840 - 1840792
Alignment:
Q  22 aactatatacaacttaagttcagctcatttatttaaggaacctaatttt 70  Q
    ||||||||||| || ||||||||||||||||||| | |||| |||||||    
T  1840840 aactatatacatctcaagttcagctcatttatttcacgaacttaatttt 1840792  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 70
Target Start/End: Complemental strand, 23915750 - 23915702
Alignment:
Q  22 aactatatacaacttaagttcagctcatttatttaaggaacctaatttt 70  Q
    |||||||||||||| ||||||| ||||||||||||| |||| |||||||    
T  23915750 aactatatacaactcaagttcaactcatttatttaatgaacttaatttt 23915702  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 22 - 70
Target Start/End: Original strand, 15306480 - 15306528
Alignment:
Q  22 aactatatacaacttaagttcagctcatttatttaaggaacctaatttt 70  Q
    ||||||||||| || |||||| |||||||||||||| |||| |||||||    
T  15306480 aactatatacagctcaagttcggctcatttatttaatgaacttaatttt 15306528  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 23 - 70
Target Start/End: Original strand, 9963747 - 9963794
Alignment:
Q  23 actatatacaacttaagttcagctcatttatttaaggaacctaatttt 70  Q
    ||||||||||||| ||||||||||||||||| ||| |||| |||||||    
T  9963747 actatatacaactcaagttcagctcatttatctaacgaacttaatttt 9963794  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 22 - 70
Target Start/End: Complemental strand, 3409341 - 3409293
Alignment:
Q  22 aactatatacaacttaagttcagctcatttatttaaggaacctaatttt 70  Q
    ||||||||||| || || |||||||||||||||||| |||| |||||||    
T  3409341 aactatatacagctcaaattcagctcatttatttaacgaacttaatttt 3409293  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 22 - 70
Target Start/End: Original strand, 40680208 - 40680256
Alignment:
Q  22 aactatatacaacttaagttcagctcatttatttaaggaacctaatttt 70  Q
    ||||||||| |||| || |||||||||||||||||| |||| |||||||    
T  40680208 aactatatataactcaaattcagctcatttatttaacgaacataatttt 40680256  T

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Target: scaffold0025 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 22 - 70
Target Start/End: Original strand, 11377 - 11425
Alignment:
Q  22 aactatatacaacttaagttcagctcatttatttaaggaacctaatttt 70  Q
    ||||||||| | ||||||||| |||||||||||||| |||| |||||||    
T  11377 aactatatatagcttaagttcggctcatttatttaacgaacttaatttt 11425  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 22 - 70
Target Start/End: Original strand, 3307921 - 3307969
Alignment:
Q  22 aactatatacaacttaagttcagctcatttatttaaggaacctaatttt 70  Q
    ||||||||||| || |||||| |||||||||||||| |||| |||||||    
T  3307921 aactatatacagctcaagttcggctcatttatttaacgaacttaatttt 3307969  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 22 - 70
Target Start/End: Complemental strand, 9505274 - 9505226
Alignment:
Q  22 aactatatacaacttaagttcagctcatttatttaaggaacctaatttt 70  Q
    ||||||||| | || ||||||||||||||||||||| |||| |||||||    
T  9505274 aactatatatatctcaagttcagctcatttatttaacgaacttaatttt 9505226  T

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